PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028207
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 332aa    MW: 37458.9 Da    PI: 4.2771
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028207genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.2e-184093356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  PGSC0003DMP400028207 40 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 93
                          456899***********************************************9 PP
2HD-ZIP_I/II130.66.1e-4239131193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e+L++++e+L +
  PGSC0003DMP400028207  39 QKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYNVLKANFDSLKHNYESLKHDNEALGK 127
                           69*************************************************************************************99 PP

           HD-ZIP_I/II  90 elke 93 
                           e++e
  PGSC0003DMP400028207 128 EIRE 131
                           9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.883595IPR001356Homeobox domain
SuperFamilySSF466893.29E-193697IPR009057Homeodomain-like
SMARTSM003894.6E-183899IPR001356Homeobox domain
CDDcd000863.17E-173996No hitNo description
PfamPF000467.5E-164093IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-2042102IPR009057Homeodomain-like
PRINTSPR000319.6E-66675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000319.6E-67591IPR000047Helix-turn-helix motif
PfamPF021838.8E-1795135IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MFFLDDQNHG NSHVYSTRDF QSMLELGLDE EGCVEESGQK KRRLSVEQVK ALEKNFEVEN  60
KLEPERKVKL AQELGLQPRQ VAVWFQNRRA RWKTKQLERD YNVLKANFDS LKHNYESLKH  120
DNEALGKEIR ELKLKVYGGE NGESRGAVVV SVKEEAMESE NDDKMIEQNK PNDLLEEEED  180
EDQDQDDDVE INATIASTIF ADFNKDGSSD SDNSSAILNE DNSPNAAAIS SSGAFLISND  240
GGVGCSSPLN FTFKFTESSP KSILGDSQKA NCFTYQPSST TTTTQYVKME EHNFFNGEES  300
CSTLFSDEQA PTLQWYCSED WNFKDTPSHL S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18795RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028207
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353200.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6
TrEMBLM1BBQ40.0M1BBQ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000416550.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.13e-57homeobox protein 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]