PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400028010 | ||||||||
Common Name | LOC102587576 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25714.1 Da PI: 9.1135 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.7e-20 | 101 | 151 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ taeeAa a+++a+ +++g PGSC0003DMP400028010 101 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAAIAYDKAAYRMRG 151 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 100 | 160 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.2E-14 | 101 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-23 | 101 | 161 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.2E-37 | 101 | 165 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.55E-31 | 101 | 160 | No hit | No description |
PROSITE profile | PS51032 | 23.947 | 101 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 102 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MDQQLLPTNF PVYRRNSSFS RLIPCLTETW GDLPLKVDDS EDMVIYGLLK DALSVGWSPF 60 SFTTGEVKSE PREEIESAPE FVPSPAEKTA APVAETPKGR HYRGVRQRPW GKFAAEIRDP 120 AKNGARVWLG TYETAEEAAI AYDKAAYRMR GSKAHLNFPH RIGLNEPEPV RVTAKRRASP 180 EPVSSSENGS MKRRRKAVRK CDGEVESRSS VMQVGCQIEQ LTGVHQLLVS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-36 | 98 | 166 | 2 | 70 | ATERF1 |
3gcc_A | 8e-36 | 98 | 166 | 2 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 195 | KRRASPEPVSSSENGSMKRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400028010 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU851735 | 0.0 | EU851735.1 Solanum tuberosum Pti4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365341.2 | 1e-171 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q40476 | 1e-123 | ERF1_TOBAC; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | M1BB78 | 1e-170 | M1BB78_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400041331 | 1e-170 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4054 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 1e-57 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400028010 |
Entrez Gene | 102587576 |
Publications ? help Back to Top | |||
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