PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400027999 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 158aa MW: 18219.6 Da PI: 5.9145 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 81 | 2.6e-25 | 6 | 134 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyW 83 ppG+rF Ptd el+++yL+kkv+ + +l + i+ + y+ P +L k++ e+e yfF+++dk + k++++ gyW PGSC0003DMP400027999 6 PPGYRFMPTDVELIQHYLTKKVHCQLpfsslASLLQDIHANEFYSKSPDNLAKNM--CEREQYFFIHEDKYFGGHTGKSQVVGngIGYW 92 9*********************99987766555556799999*********8554..57899*****999777555555554433799* PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + g++ ++++++g ++glk L ++ +++++k +W+m yrl PGSC0003DMP400027999 93 QCLGEEIPIYNSEGDVIGLKVNLKYF---SESSKKNNWTMVKYRL 134 **************************...4555689*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-25 | 3 | 139 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.294 | 5 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-16 | 6 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MITEFPPGYR FMPTDVELIQ HYLTKKVHCQ LPFSSLASLL QDIHANEFYS KSPDNLAKNM 60 CEREQYFFIH EDKYFGGHTG KSQVVGNGIG YWQCLGEEIP IYNSEGDVIG LKVNLKYFSE 120 SSKKNNWTMV KYRLTCEYDT SDAEVTIHTN FPCNFFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-15 | 5 | 134 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400027999 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 3e-91 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506326.1 | 3e-59 | PREDICTED: NAC domain-containing protein 101-like, partial | ||||
TrEMBL | M1BB67 | 1e-115 | M1BB67_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400041310 | 1e-116 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16166 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 3e-20 | NAC domain containing protein 46 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400027999 |
Publications ? help Back to Top | |||
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