PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026836
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 354aa    MW: 40469.1 Da    PI: 8.2649
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026836genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.7e-17122171255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+WvAeIr p++   r+r +lg+f +aeeAa a++  + +l+g
  PGSC0003DMP400026836 122 QYRGVRQRH-WGKWVAEIRLPRK---RTRLWLGTFESAEEAAFAYDVEAFRLRG 171
                           7*******9.**********954...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.17E-33121181No hitNo description
PfamPF008472.0E-10122171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-31122180IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-22122180IPR016177DNA-binding domain
SMARTSM003804.4E-38122185IPR001471AP2/ERF domain
PROSITE profilePS5103223.446122179IPR001471AP2/ERF domain
PRINTSPR003673.2E-10123134IPR001471AP2/ERF domain
PRINTSPR003673.2E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MENIESIDNV QSIMSMYRPL KKLKINPSSQ HNSLRSSGDG VEPVAQRIRA RGYEPQFRFP  60
FALDDPPSSN CHLNWQSLTQ NQTMISFAPQ SCFNQCRITD NGTRTTTMMN VYGTVSSPVP  120
KQYRGVRQRH WGKWVAEIRL PRKRTRLWLG TFESAEEAAF AYDVEAFRLR GTDARLNFPH  180
LFLGDLAPSD KNIDETNSAS SSTTSFAKIP SQIQNNKRCI RQCRNKNRVP SAVEQSTSVL  240
DKEIRMQNKA AYNKPLWYDP SQDSVRNESF VHQTSQIKMF DGSDFYESTP KYTSNIQQEN  300
SDMWKNVLQS NPFGNYSICT DDNLQQQQQP CDFTITDPGF GDDVFNFSSK LLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20121179160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-20121179463ATERF1
3gcc_A1e-20121179463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026836
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001355177.10.0ethylene response factor H.13
TrEMBLM1B8H70.0M1B8H7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000395760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.19e-32ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]