PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026755
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 534aa    MW: 59347.8 Da    PI: 6.8554
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026755genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.67.6e-1161605321374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfse 86 
                           lv+lL++cAeav+ +d+++a+ lL++l+  a   g+++qR+a++f+++La rla  +  +++  +++ + ++++   +++  al+l++e
  PGSC0003DMP400026755 160 LVQLLITCAEAVACRDKSRASVLLSELRASALVFGTSFQRVASCFMQGLADRLALvQPLGTVGYVATPAMNKTDiaLEKKEEALRLLYE 248
                           689**************************************************9843334554555555554446688899999***** PP

                  GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAe 170
                           ++P ++f+h++aN  Ilea+ege+ +H++D+++s    +G QW  L+q+L +Rp++ p +lRiT+vg+    + e+l+ +g+ L+++A+
  PGSC0003DMP400026755 249 TCPHIQFGHFVANCSILEAFEGESFIHVVDLGMSlglpHGHQWRRLIQSLVNRPGQLPhRLRITAVGQ----NIEKLQIIGDELEDYAR 333
                           ******************************99874444678*************776649********....99*************** PP

                  GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                           +lg+++ef++ v+++le+l++++++v  gE l+Vn++lqlh +++es    +   +vL++v +lsPk++v+veq+++hn++ Fl rf+e
  PGSC0003DMP400026755 334 SLGINLEFSA-VESNLENLKPKDIKVYDGEILVVNSILQLHCVVKESRGALN---SVLQVVHELSPKILVLVEQDSSHNGPFFLGRFME 418
                           **********.79*******************************88877777...8********************************* PP

                  GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
                           al+yysa+fdsl++ lp+ +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  +++qak  l+kv+  +
  PGSC0003DMP400026755 419 ALHYYSAIFDSLDVMLPKYDTRRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MVSQAKQWLAKVNgHE 505
                           *********************************************************************96..79************** PP

                  GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                           g+++ ee+g+lvlgWk++p+v++S+W+
  PGSC0003DMP400026755 506 GFTITEEKGCLVLGWKSKPIVAASCWK 532
                           **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.26134513IPR005202Transcription factor GRAS
PfamPF035142.6E-113160532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MIHNMANVFL SLEPCNGDQI GYDPMENGLY LSHHKDLSYS LNPYTSVLKR NAPTNSMIIS  60
TLSNDSGSFK RLRRTPSLGE SFGSNSTFYS TDSSSGGSSN CSLPRIGSTN SVNSLSLQPG  120
IHFRDHVWAL NQRYLAAEAI EEAAADIINQ EEENGEGMKL VQLLITCAEA VACRDKSRAS  180
VLLSELRASA LVFGTSFQRV ASCFMQGLAD RLALVQPLGT VGYVATPAMN KTDIALEKKE  240
EALRLLYETC PHIQFGHFVA NCSILEAFEG ESFIHVVDLG MSLGLPHGHQ WRRLIQSLVN  300
RPGQLPHRLR ITAVGQNIEK LQIIGDELED YARSLGINLE FSAVESNLEN LKPKDIKVYD  360
GEILVVNSIL QLHCVVKESR GALNSVLQVV HELSPKILVL VEQDSSHNGP FFLGRFMEAL  420
HYYSAIFDSL DVMLPKYDTR RAKIEQFYFA EEIKNIVSCE GPARVERHER VDQWRRRMSR  480
AGFQAAPIKM VSQAKQWLAK VNGHEGFTIT EEKGCLVLGW KSKPIVAASC WKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-621485316377Protein SCARECROW
5b3h_D4e-621485316377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026755
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165968.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLM1B8B10.0M1B8B1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000394550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-77GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]