PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026627
Common NameLOC102580520
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 502aa    MW: 56285.2 Da    PI: 7.1584
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026627genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.3e-1926116199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ffkv+   d   ++ l +p kfa++ ++   ++++  led+sg++W+v++  ++++g+  +++GW +F +++gL++gDf+vF+++  + 
  PGSC0003DMP400026627  26 FFKVM--IDKRFLQVLFFPPKFARSVSHL--TDQETYLEDSSGQRWRVTV--CNHKGSLSIRQGWPKFSSDHGLDVGDFLVFHYVPGQH 108
                           88888..788888899*********9766..4568***************..*******************************985566 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f   vk+f +
  PGSC0003DMP400026627 109 F--IVKIFGT 116
                           6..9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-2222119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.19724117IPR003340B3 DNA binding domain
CDDcd100174.34E-1825114No hitNo description
Gene3DG3DSA:2.40.330.102.3E-2025119IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.4E-1226117IPR003340B3 DNA binding domain
PfamPF023625.4E-1726115IPR003340B3 DNA binding domain
PROSITE profilePS508638.713406501IPR003340B3 DNA binding domain
SMARTSM010190.14411499IPR003340B3 DNA binding domain
CDDcd100172.54E-9415499No hitNo description
SuperFamilySSF1019367.06E-11419492IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-9419492IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-7420491IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MECENEACGG CKKDCMLIHG KEVLSFFKVM IDKRFLQVLF FPPKFARSVS HLTDQETYLE  60
DSSGQRWRVT VCNHKGSLSI RQGWPKFSSD HGLDVGDFLV FHYVPGQHFI VKIFGTSGCE  120
KKSCSDIGNG RKRARTYPEA TTPDELFQTT DINSVKKKSK TSAESESEKV TYKTNTANFR  180
TSTESESEKV TYKTNTANFK TSAESESEKV TYKPNTANFA TNIDSDIGKG QSVHSAIDVD  240
ESCCMIDRNA QYDQEDDRLC LHLSSFEMPA SKPLTEGTRS PFKGDIGKDN QVEANFRSQT  300
EPNLNVEIDN LNSKAPSSKL EAGIRATNMV SSPAKDIPLR DPKYKKSNEA SQFAREARLV  360
KKEFEEITTE AFSPARAIHG GEYANGNEKV IKSEPADSED APSLNAVNYS CLVEIDGRDF  420
LELPESWRKY LLQKAKLGRM IIYLRGPDKR IWPTLYYSRS GFNVLTCGWK QVAATYGLNP  480
GDECLFQLVN QRGCIFDVRK I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026627
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351459.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like isoform X1
TrEMBLM1B7Z90.0M1B7Z9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000392490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-13B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]