 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400026217 |
| Common Name | LOC102604465 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
GRAS |
| Protein Properties |
Length: 612aa MW: 66710.9 Da PI: 4.5585 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400026217 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 353.6 | 3e-108 | 243 | 610 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
+ L+ecA+ + ++ e++ + L rl+e +s++gdpm+R+ +yf+eAL + l++ + ++ + t + +e + ++k+f++++P+
PGSC0003DMP400026217 243 LKSLVECARLAE-SEPENVVKSLIRLRESVSQQGDPMERVGFYFLEALYNGLSS--CQAERTPSIFGT---TPEELTLSYKAFNDACPY 325
578******655.57888888999******************************..222333333333...36788999********** PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
kf+hltaNqaIlea+e+++r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s g + +l +tg+rL++fA+ l+++f
PGSC0003DMP400026217 326 SKFAHLTANQAILEATEKATRIHIVDFGIVHGIQWAAFLQALATRSAGKPvSVRISGIPSVVLGnsPAASLLATGNRLRDFAKLLDLNF 414
**********************************************88777*********877788999******************** PP
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
ef++ + + +++l+ +++r++p+E laVn++lql++llde+ + + L+l ksl+P +v++ e e+++n+ Fl+rf +al+yys
PGSC0003DMP400026217 415 EFEP-ILTPVQELNGSSFRIDPDEILAVNFMLQLYNLLDETNVGVE---TALSLAKSLNPSIVTLGEYEVNLNDVGFLQRFKNALKYYS 499
****.799******************************88776666...9*************************************** PP
GRAS 266 alfdsleaklpreseerikvErellgreivnvvac.egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
++f+sl+ +l r+s er+ vEr +lgr+i +v g rre +e +e+Wre +e aGFkpv+ls++a++qak ll +++ s + +
PGSC0003DMP400026217 500 TVFESLDPSLTRDSPERVQVERLILGRRIAGAVGLdDGGTRRECMEDKEHWRELMEGAGFKPVTLSHYAMSQAKILLWNYNySSSFGLI 588
*********************************7516778*****************************************99999998 PP
GRAS 353 eesgslv.lgWkdrpLvsvSaW 373
++ ++ l Wkd+pL++vS+W
PGSC0003DMP400026217 589 DSAPGFLsLAWKDNPLLTVSSW 610
88777766************** PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 612 aa
Download sequence Send
to blast |
MAYMCTDSGN LMAIAQQVIK QKQQQEQLQQ QEQQQQQQQQ QFLGVNPLCL SPWTSTTHQT 60
LTNSPTLGYG LTGAGFADPF QVAGGTDGGE PGFQFPNLEH HSTGFRFADF GGGPGGEFDS 120
DEWMESLIGG GDSTGSSNLQ SGCEAWQTSS EFTTLYGDPF SSCPNRLSIG SSPPPPPSSD 180
LNGVIFSETQ KNLNSLQPQT SPWVAPSSSP PPIVQPVCKE SKVVSVDVLP CSSPESFSSK 240
PLLKSLVECA RLAESEPENV VKSLIRLRES VSQQGDPMER VGFYFLEALY NGLSSCQAER 300
TPSIFGTTPE ELTLSYKAFN DACPYSKFAH LTANQAILEA TEKATRIHIV DFGIVHGIQW 360
AAFLQALATR SAGKPVSVRI SGIPSVVLGN SPAASLLATG NRLRDFAKLL DLNFEFEPIL 420
TPVQELNGSS FRIDPDEILA VNFMLQLYNL LDETNVGVET ALSLAKSLNP SIVTLGEYEV 480
NLNDVGFLQR FKNALKYYST VFESLDPSLT RDSPERVQVE RLILGRRIAG AVGLDDGGTR 540
RECMEDKEHW RELMEGAGFK PVTLSHYAMS QAKILLWNYN YSSSFGLIDS APGFLSLAWK 600
DNPLLTVSSW H*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215443 | 0.0 | AC215443.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0010E18, complete sequence. |
| GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
