PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025629
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 274aa    MW: 31951.8 Da    PI: 6.6
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025629genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-172168148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT eEd ll++++  +  g+W++ a++ g++Rt+k+c++rw++yl
  PGSC0003DMP400025629 21 RGPWTLEEDNLLIHYISTHDEGRWNALAKCAGLKRTGKSCRLRWLNYL 68
                          89********************************************97 PP
2Myb_DNA-binding52.88.9e-1774117146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  PGSC0003DMP400025629  74 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 117
                           7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9631668IPR017930Myb domain
SuperFamilySSF466891.4E-3018115IPR009057Homeodomain-like
SMARTSM007171.5E-152070IPR001005SANT/Myb domain
PfamPF002495.6E-162168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-232275IPR009057Homeodomain-like
CDDcd001672.38E-102368No hitNo description
PROSITE profilePS5129425.75169123IPR017930Myb domain
SMARTSM007172.7E-1573121IPR001005SANT/Myb domain
PfamPF002498.8E-1674117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2376122IPR009057Homeodomain-like
CDDcd001673.65E-1078117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSNDNNNNNL SNKDELFELR RGPWTLEEDN LLIHYISTHD EGRWNALAKC AGLKRTGKSC  60
RLRWLNYLKP DIKRGNLTPQ EQLLILELHS KWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ  120
KQARQLKVDS NSKKFVEAIK NLWVPRLLEK MEQCSSSSIE KKLPNLPLIN NNQEPCTKHN  180
KSHDTNNNHN TTWGSLENSL DSMNVLNENL NSILQDDECY HVGSFIQQPE HLTYQEMSIS  240
ECEVAEANWL NDEGSLWNMD ELWQFKKLGD VDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-241812324128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025629
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344301.20.0PREDICTED: transcription factor MYB108
SwissprotQ9C9G71e-87MYB62_ARATH; Transcription factor MYB62
TrEMBLM1B5S10.0M1B5S1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000377160.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-88myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]