PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400025228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HSF | ||||||||
Protein Properties | Length: 261aa MW: 29405.3 Da PI: 4.4933 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.2 | 6.1e-34 | 26 | 109 | 2 | 94 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+y+++ed++++++isw+e+g++f+v+++ efak++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++sF++g+ PGSC0003DMP400025228 26 FLTKTYQLIEDQSIDDVISWNEDGSTFIVWNPAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDSFRRGS 105 9*****************************************************************99.........**********99 PP XXXX CS HSF_DNA-bind 91 kell 94 + +l PGSC0003DMP400025228 106 TAEL 109 8665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.3E-38 | 17 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.6E-50 | 22 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.36E-32 | 23 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.3E-30 | 26 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-20 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-20 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-20 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MTPQPIDRNG GETTAGETQR SVPTPFLTKT YQLIEDQSID DVISWNEDGS TFIVWNPAEF 60 AKDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFANDS FRRGSTAELL GENERLRLEN 120 LQLNKELNSM KKLCGNIYGM MSNYAQPSSS GNQSAESSSP GLKPLDLLRT EQYLGESQVK 180 AVEDGESLEE PEARLFGFSI GMKRVREGEE ERTDHAQDLQ LQQPGTTDVK SEASDQESNG 240 ESEERSWLVQ CGGRNQRTCN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-22 | 6 | 104 | 12 | 118 | Heat shock factor protein 1 |
5d5v_B | 5e-22 | 6 | 104 | 12 | 118 | Heat shock factor protein 1 |
5d5v_D | 5e-22 | 6 | 104 | 12 | 118 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400025228 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-154 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 1e-154 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015166754.1 | 1e-107 | PREDICTED: heat stress transcription factor B-2a-like | ||||
TrEMBL | M1B4W6 | 0.0 | M1B4W6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400037144 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2182 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 2e-53 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400025228 |
Publications ? help Back to Top | |||
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