PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025180
Common NameLOC102597000
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 279aa    MW: 31568.2 Da    PI: 6.7978
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025180genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151663148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W+++Ed++l++++ ++G g+W++++   g+ R +k+c++rw +yl
  PGSC0003DMP400025180 16 KGLWSPDEDDRLKNYIIKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 63
                          678*******************************************97 PP
2Myb_DNA-binding54.42.9e-1769114148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+++ eE++ ++ +++++G++ W+ Ia++++ gRt++++k++w++yl
  PGSC0003DMP400025180  69 RGAFSLEEEDTILTLHAMFGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 114
                           89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-211166IPR009057Homeodomain-like
PROSITE profilePS5129417.2331163IPR017930Myb domain
SuperFamilySSF466894.03E-2914110IPR009057Homeodomain-like
SMARTSM007172.5E-111565IPR001005SANT/Myb domain
PfamPF002491.3E-131663IPR001005SANT/Myb domain
CDDcd001679.77E-101963No hitNo description
PROSITE profilePS5129426.8364118IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2667118IPR009057Homeodomain-like
SMARTSM007173.2E-1668116IPR001005SANT/Myb domain
PfamPF002493.0E-1669114IPR001005SANT/Myb domain
CDDcd001671.71E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGCKVAAEKP KQKHKKGLWS PDEDDRLKNY IIKHGHGCWS SVPINAGLQR NGKSCRLRWI  60
NYLRPGLKRG AFSLEEEDTI LTLHAMFGNK WSQIAQHLPG RTDNEIKNHW HSYLKKRVSK  120
MAENEGHTKS GKTDSSPSLK KLTPQNSSLD SFEHIEGSLA DSDQSVYPRE PQKSNLPKVL  180
FAEWLSLDQF NGQDFQNSGS FEPSKSNFGY NNAELHDIFM HSLPMNNDGS SSYGNGVNQE  240
IHNDIFPPQL KFEDTMSGNG FEEFMSGEFN INDDVMYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-221611827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353308.10.0PREDICTED: transcription factor LAF1-like
TrEMBLM1B4S40.0M1B4S4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000370800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.16e-65myb domain protein 19
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]