PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400024506 | ||||||||
Common Name | ERF1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21065.6 Da PI: 8.7554 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 25 | 76 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr+ AeIrdp++ ++r +lg+f+tae+Aa+a++ a+++++g+ PGSC0003DMP400024506 25 PRYRGVRKRP-WGRFSAEIRDPVK---KARKWLGTFDTAEGAARAYDTAARSFHGA 76 68********.**********654...5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.13E-29 | 25 | 85 | No hit | No description |
Pfam | PF00847 | 3.4E-11 | 25 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.538 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-34 | 26 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-30 | 26 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 26 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.8E-10 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MPRRKNPDTN GSRSVVFRQS EIDPPRYRGV RKRPWGRFSA EIRDPVKKAR KWLGTFDTAE 60 GAARAYDTAA RSFHGAKAKT NFPILPPYGE NQFENLQQSR PASSSMSSTV ESSSDARALC 120 KIMQPRIEIP RRIPMGEGHS DCDSSSSVVD GNCIGGGDDQ TSSFCKDPLP FDLNFPPPSD 180 DFHIIAPLCF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 27 | 90 | 6 | 70 | ATERF1 |
3gcc_A | 2e-19 | 27 | 90 | 6 | 70 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400024506 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN125860 | 0.0 | JN125860.1 Solanum tuberosum ethylene response factor ERF1 (ERF1) mRNA, complete cds. | |||
GenBank | JX428798 | 0.0 | JX428798.1 Solanum tuberosum transposase-related c2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001275619.1 | 1e-139 | ethylene-responsive transcription factor 7-like | ||||
TrEMBL | A0A0V0HP81 | 1e-138 | A0A0V0HP81_SOLCH; Putative ethylene-responsive transcription factor 7-like | ||||
TrEMBL | G3K512 | 1e-138 | G3K512_SOLTU; Ethylene response factor ERF1 | ||||
STRING | PGSC0003DMT400036071 | 1e-138 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 8e-30 | ethylene responsive element binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400024506 |
Entrez Gene | 102592697 |
Publications ? help Back to Top | |||
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