PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024204
Common NameLOC102587769
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 1098aa    MW: 121260 Da    PI: 6.4785
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024204genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3621e-19130231199
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++ yr++++r++lt+GW+  v+ ++L +gD+v+F 
  PGSC0003DMP400024204 130 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNIWTFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDSVLFI 217
                           99*****************************9777766.49************************************************ PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                           +d++++f  +++++++
  PGSC0003DMP400024204 218 RDDKHQF--LLGIRKA 231
                           7665666..9888875 PP
2Auxin_resp118.17.3e-39256339183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaa+++s+F+v+YnPra++seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  PGSC0003DMP400024204 256 AAHAAANNSPFTVFYNPRAGPSEFVIPLAKYYKATYsSQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 339
                           79*******************************99879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.93E-41121259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-38121245IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-17129230No hitNo description
PfamPF023623.0E-17130231IPR003340B3 DNA binding domain
SMARTSM010196.1E-21130232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.11130232IPR003340B3 DNA binding domain
PfamPF065073.1E-34256339IPR010525Auxin response factor
PROSITE profilePS5174526.3659851069IPR000270PB1 domain
PfamPF023098.2E-69871070IPR033389AUX/IAA domain
SuperFamilySSF542771.86E-510031061No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1098 aa     Download sequence    Send to blast
MKTPGNGAGG GNVNPAEGEK KSINPELWQA CAGPLVNLPV AGTHVVYFPQ GHSEQVAASI  60
KKDVEAQIPN YPNLPSKLIC LLHNVTLHAD PETDEVYAQM TLQPVPSFDK EALLRSDLSM  120
KANKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSLQPPAQEL VARDLHDNIW  180
TFRHVYRGQP KRHLLTTGWS LVVSGKRLFA GDSVLFIRDD KHQFLLGIRK ANRQPTNLSS  240
SVLSSDSMHI GILAAAAHAA ANNSPFTVFY NPRAGPSEFV IPLAKYYKAT YSSQISLGMR  300
FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESTAGER INRVSIWEIE  360
PITAPFLICS SPFFSSKRPR QPGMPDGDYS DMDGMFKRTM PWLGDDFGMT DPQGLPGLSL  420
IQWMNMQKNP SLANPMIPNY MNSLSGSALQ NLAGADLSRQ LGMAAPQFQQ QQMQHNLQFN  480
NAHRPNQQLD QLQKLPAATL NPLDSIMQSQ QQLSDVSQQP RQNLTNQSLP TTQVHTQHMQ  540
AQSLVQSQNV LPPQQSVQNQ NQLQRNLPQS LPQQHPQQQI LSQTQQQSFM PSQPPDPVNQ  600
QQHFSDNQAQ LQMLQKLHQQ QKSLLAQQSG LQQPSQLGPI QDHQKQLMDA SQNFSRSLAT  660
NQMLDASQTM STSLPHSQVV QQQQMTRINS PSNLRFSQST QQPKLQQQQS GNLSDLSGPV  720
NYSLPRTSYQ LSTNGSNLTG TAGGGQSLVI DDVPSWSTSV STNNCHSVVQ PNMNGRITGA  780
RDEMTHCSGP FEVMSANNNL QPKSDVKPSV NVVSKSQNHG FLAPQTLNTS GIQFDYLDSS  840
SSATSACLSQ NDVQLQQTAT DPLSCSSQPL IFRDSPDGGE VQGDPRNNVA FGATNMNNNQ  900
LGLPMIPDPL ITKSSMGSRK DFSDNLSSGG GMLSSYENPK EAQPELLASM ASEYVTFNSI  960
DSTINDGSFM DRGAWEPPPQ LPRLRTYTKV YKRGAVGRSI DIARYSGYEE LKLDLARRFG  1020
IEGQLEDRQR IGWKLVYVDH EKDVLLVGDD PWEEFVSCVH CIKILSPQEV QQMSLDGDFG  1080
GSVLQNQDCS SSDAGDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651936047388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5651300.0HM565130.1 Solanum lycopersicum auxin response factor 19-1 (ARF19-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360656.10.0PREDICTED: auxin response factor 19-like
RefseqXP_006360657.10.0PREDICTED: auxin response factor 19-like
TrEMBLM1B2I20.0M1B2I2_SOLTU; Auxin response factor
STRINGPGSC0003DMT4000355920.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]