PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400023700 | ||||||||
Common Name | LOC102596583 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 216aa MW: 23925.3 Da PI: 6.393 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.5 | 3.2e-10 | 64 | 108 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + +Y+k L PGSC0003DMP400023700 64 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 108 99***********************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.83E-11 | 57 | 113 | No hit | No description |
SuperFamily | SSF47459 | 4.58E-16 | 57 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.323 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-16 | 61 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.4E-8 | 64 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-11 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDMGNLYPGL EHLQSHAVCL SVPQVHQVQP FQGHPTSSTT VTIPHQPAIR PMVRARRGQA 60 TDPHSIAERL RRERISERIK ALQELVPSCN KTDRAAMLDE ILDYVKFLRL QVKVLSMSRL 120 GGASAVAQLV ADIPLQSVEG DSCESRSNQH VWEKWSDSET EQEVAKLMEE DVGTAMQYLQ 180 SKSLCIMPVS LAALIYPTQQ TDNQSMVKPE PTAPS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 73 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400023700 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013231 | 0.0 | BT013231.1 Lycopersicon esculentum clone 134477R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356051.2 | 1e-159 | PREDICTED: transcription factor UNE12-like | ||||
Refseq | XP_015168141.1 | 1e-159 | PREDICTED: transcription factor UNE12-like | ||||
Swissprot | O22768 | 6e-74 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | M1B1D0 | 1e-157 | M1B1D0_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1B1D4 | 1e-158 | M1B1D4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400034840 | 1e-158 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 4e-72 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400023700 |
Entrez Gene | 102596583 |
Publications ? help Back to Top | |||
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