PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400023697 | ||||||||
Common Name | LOC102596583 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 297aa MW: 32476.7 Da PI: 5.1562 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.8 | 5.4e-10 | 145 | 189 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + +Y+k L PGSC0003DMP400023697 145 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 189 99***********************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.51E-16 | 138 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.55E-11 | 138 | 194 | No hit | No description |
PROSITE profile | PS50888 | 16.323 | 140 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-16 | 142 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-7 | 145 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-11 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MANNPPEVYA ADDFLQQILA IPSYASLPVT DISAGTSSEN SASGISQLQH QRLFPLGLSL 60 DNGFADANNT GGFQVKTERE AMDMGNLYPG LEHLQSHAVC LSVPQVHQVQ PFQGHPTSST 120 TVTIPHQPAI RPMVRARRGQ ATDPHSIAER LRRERISERI KALQELVPSC NKTDRAAMLD 180 EILDYVKFLR LQVKVLSMSR LGGASAVAQL VADIPLQSVE GDSCESRSNQ HVWEKWSDSE 240 TEQEVAKLME EDVGTAMQYL QSKSLCIMPV SLAALIYPTQ QTDNQSMVKP EPTAPS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 154 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400023697 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013231 | 0.0 | BT013231.1 Lycopersicon esculentum clone 134477R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356051.2 | 0.0 | PREDICTED: transcription factor UNE12-like | ||||
Refseq | XP_015168141.1 | 0.0 | PREDICTED: transcription factor UNE12-like | ||||
Swissprot | O22768 | 2e-78 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | M1B1D0 | 0.0 | M1B1D0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400034840 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 4e-76 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400023697 |
Entrez Gene | 102596583 |
Publications ? help Back to Top | |||
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