PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023696
Common NameLOC102596583
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 297aa    MW: 32476.7 Da    PI: 5.1562
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023696genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.4e-10145189554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  PGSC0003DMP400023696 145 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 189
                           99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-16138200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-11138194No hitNo description
PROSITE profilePS5088816.323140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-16142200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7145189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MANNPPEVYA ADDFLQQILA IPSYASLPVT DISAGTSSEN SASGISQLQH QRLFPLGLSL  60
DNGFADANNT GGFQVKTERE AMDMGNLYPG LEHLQSHAVC LSVPQVHQVQ PFQGHPTSST  120
TVTIPHQPAI RPMVRARRGQ ATDPHSIAER LRRERISERI KALQELVPSC NKTDRAAMLD  180
EILDYVKFLR LQVKVLSMSR LGGASAVAQL VADIPLQSVE GDSCESRSNQ HVWEKWSDSE  240
TEQEVAKLME EDVGTAMQYL QSKSLCIMPV SLAALIYPTQ QTDNQSMVKP EPTAPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023696
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132310.0BT013231.1 Lycopersicon esculentum clone 134477R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356051.20.0PREDICTED: transcription factor UNE12-like
RefseqXP_015168141.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227682e-78UNE12_ARATH; Transcription factor UNE12
TrEMBLM1B1D00.0M1B1D0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000348400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.24e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]