PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022872
Common NameLOC102579890
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 339aa    MW: 38311.3 Da    PI: 8.8578
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022872genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.57.5e-1815100272
              trihelix   2 WtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                           Wt qe+++Liea++ ++er  +++                 + +W++v ++++++g+ rs++qC++kw+nl +++kk++e e++ +
  PGSC0003DMP400022872  15 WTIQETMVLIEAKKMDDERRMKRQggdgnsssergninkPGELRWKWVEDYCWRHGCLRSQNQCNDKWDNLMRDFKKVREYERRVS 100
                           *************966665554433444555666666558899**************************************99864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.725786IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.4E-41187IPR009057Homeodomain-like
PfamPF138376.3E-121498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDSSSMLRDY RKGNWTIQET MVLIEAKKMD DERRMKRQGG DGNSSSERGN INKPGELRWK  60
WVEDYCWRHG CLRSQNQCND KWDNLMRDFK KVREYERRVS EKLLLAQGDD DNIIKSYWKI  120
ERIERKEKNL PTNMLPEIYE ALVQVVDKRG QKVLVGTSFN PSTTSMSPTL QQLQIATLPL  180
PPPPPPQLLP PPPPPPLGQP PPNIPYTQPL PTMCDSSDRD KSEHSDSPAK RRRKGEGGGG  240
GEEASGTSGD HHNINNLQEV GSAIFKSATI IAKTIKASEE GEERRHREML NLHERRLQIE  300
ESKAEINRQG INGLVDSINR LANSILSLAS NNQPPPPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022872
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356897.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLM1AZF00.0M1AZF0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000336270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.14e-55Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]