PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022483
Common NameLOC102584809
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 526aa    MW: 55070 Da    PI: 8.5381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022483genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-056688123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C++C+k F r  nL+ H r H
  PGSC0003DMP400022483 66 FVCEICSKGFQRDQNLQLHRRGH 88
                          89*******************88 PP
2zf-C2H214.40.00011142164123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k +  +s+Lk H + +
  PGSC0003DMP400022483 142 WKCDKCSKKYAVQSDLKAHSKIC 164
                           58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.2E-76588No hitNo description
Gene3DG3DSA:3.30.160.606.3E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0366688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8876688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355230107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.2E-7137162No hitNo description
PROSITE profilePS501578.746142170IPR007087Zinc finger, C2H2
SMARTSM0035566142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MPADPDNSSA MNDSTGSGEA SVSSSGNQAV PLKESAKKKR NLPGMPDPDA EVIALSPTTL  60
MATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVKKRVYVCP ESSCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAQESAKT LPEKPPSTNE EPKTQAVASS SPPPPTPPAP PPATESQPPP  240
PAPKPLMTPT VPPSTAVMTF ASSVQNQELR ENPITNSAGT ATKQVLEEAA AVASLTGNCS  300
SSCSNGSSSS SVFGSLFASS TASGNLPSQA PVFSDMFRAM APESTLEMAP PSSTEPISLG  360
LAMSHSSSFF RQAGQERRQY APTPQPAMSA TALLQKAAQM GAVATSSSFL RGFGVMSSTS  420
SSNGYQEWSG RPIDANGASY AAGLGLGLPC DGGSGLKELM LGTPSMFGPK HPTLDLLGLG  480
MAASVGPSPG LSALITSMGS NLDMVTSAGS FGTADFSGKD LGRNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33138199364Zinc finger protein JACKDAW
5b3h_F2e-33138199364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022483
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5177940.0EF517794.1 Solanum bulbocastanum BAC 27I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363144.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-167IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLM1AYI40.0M1AYI4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000330390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-106C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]