PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400022160 | ||||||||
Common Name | LOC102585416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 27498.9 Da PI: 4.7479 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.3e-18 | 50 | 100 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ + +Wv+e+r+ps+ +kr++lg++ t+e+Aa+a++ a+++l+g+ PGSC0003DMP400022160 50 IYRGVRRRN-NSKWVCELREPSQ---QKRIWLGTYSTPEMAARAHDVAALALRGN 100 69****887.8*********954...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.83E-29 | 49 | 109 | No hit | No description |
Pfam | PF00847 | 4.6E-13 | 49 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-28 | 50 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.193 | 50 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-28 | 50 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-21 | 50 | 109 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-7 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-7 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MNNDSSLYSS DLNPLSATIA SDEEGILLLA SSRPKKRAGR KKFKETRHPI YRGVRRRNNS 60 KWVCELREPS QQKRIWLGTY STPEMAARAH DVAALALRGN LATLNFADSR WRLPVPASKD 120 PKDIRQAAVI AAQAFSQDTE LVGIDGMIEE INSSTIDEIK YQEIDITRAN NGSSRDFGAK 180 ELCIDMENNL CCNWGEDNDM LEMEGWQEKM AEGLLFSPTP RLGSCFSWDD VESEVEVSLW 240 SYSI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400022160 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358387.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
TrEMBL | M1AXP9 | 0.0 | M1AXP9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400032621 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 3e-45 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400022160 |
Entrez Gene | 102585416 |
Publications ? help Back to Top | |||
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