PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021842
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 361aa    MW: 40669.1 Da    PI: 7.2648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021842genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14169216355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r+h + ErrRR++iN++f  L ++lP++      K++K++ L +++eY+k+L+
  PGSC0003DMP400021842 169 RNHVISERRRREKINERFMHLASMLPTS-----SKVDKISLLDETIEYMKELE 216
                           5799***********************8.....7****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.736166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-12169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-13169220No hitNo description
SuperFamilySSF474591.7E-17169230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-17170228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-16172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVVDGIGETS QAQSWRFMDD NMSNGANNSL NSSDCISQNN ANCEKLSPLS SGEKETKPCP  60
LDHQENDQKK PHLLDHQRDD AQYQAVLSTL LKSSDQLTLG PHFSNMNKKS SFAGWKTDIQ  120
MPRFGTAQKL LKKVLLEVPR MHAGVIHKFS RENGKKNSLW RPEVDDIDRN HVISERRRRE  180
KINERFMHLA SMLPTSSKVD KISLLDETIE YMKELERRVQ ELEARSARRS NDTAEQTSDN  240
CGTSKFNDIR GSLLNKRKAC DMDEMEPESC NGLLKRSSAD SIVINMIDKE VSIKMSCLWS  300
ESLLLKIMEA LTDLHMDCHT VQSSNIDGIL SIAIESKSTG SKTVAVGTIR EALQRVVWKS  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERRRRE
2175180RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021842
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG7638620.0HG763862.1 Solanum tuberosum mRNA for JAF13 transcription factor.
GenBankKP3171760.0KP317176.1 Solanum tuberosum cultivar Hei Meiren JAF13 (JAF13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343977.10.0PREDICTED: transcription factor GLABRA 3-like isoform X1
TrEMBLM1AWY50.0M1AWY5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000321400.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-76bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]