PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021649
Common NameLOC102588761
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 432aa    MW: 48790.1 Da    PI: 7.231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021649genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-13249295354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  PGSC0003DMP400021649 249 KNHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVTYINEL 295
                           689************************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-3816167IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.028246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-11249295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17249311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-14249300No hitNo description
Gene3DG3DSA:4.10.280.101.3E-18250311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-16252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MQDFISSSST SLLNTLQKRL HYIIHNRQEW WVYAIFWQAS KDTNGRLIFS WGDGHFRDTN  60
DLALTKVHIA NADSNVSDME MFYAVSAPNC FVSEDDLIVH AYNSGSYVWL NNYYELQLYN  120
YDRAKEAHLH GIRTLVCIST PHGVVELGSS QVIPENLELV QLIKSLFGLS NNNNNSPSQG  180
VSSFNFVPLG DHILQREMNT KEIIMGNKSS DSGNSDYDNE SSAINKDANS PKKRGRKSSS  240
STIERATAKN HVEAERQRRE KLNHRFYALR SVVPNVSKMD KASLLADAVT YINELKAKVE  300
EFKGKVEELE SSKIIQKNRN YSFTEMYSAS SAVVDRTNNI INSSFAAYGM EVEVKIIGVE  360
AMIRVRSPNV NYPCARLMNV LRELEFQIHH ASVSSVKEMM QQDVVIKIPH NVTNDEAIKS  420
VILTKLSLAY I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-23141677192Transcription factor MYC3
4rqw_B3e-23141677192Transcription factor MYC3
4rs9_A3e-23141677192Transcription factor MYC3
4yz6_A3e-23141677192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021649
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092611e-148AP009261.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence.
GenBankAP0092801e-148AP009280.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0201M14, complete sequence.
GenBankHG9754471e-148HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755201e-148HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162598.10.0PREDICTED: transcription factor MYC2-like
TrEMBLM1AWG40.0M1AWG4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000318990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-59bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]