PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021525
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 523aa    MW: 58390.6 Da    PI: 8.8461
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021525genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.68.6e-104289455
                   AP2  4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          +G+r+ k +gr+ +e+ dp    +r kr+++g+f+t eeA +a+   + ++e+
  PGSC0003DMP400021525 42 PGIRRQK-NGRYGVELTDP----IRhKRVWVGTFDTVEEASQAYSSKKSEFEN 89
                          69*9888.8*******997....357******************877777766 PP
2AP227.67.5e-09221263853
                   AP2   8 wdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                           ++ k+gr++A I d +     + kr++lg+f+t eeA +a+   + ++
  PGSC0003DMP400021525 221 RKQKNGRYAAVITDpF-----ThKRVRLGTFDTVEEASQAYFSKKSEF 263
                           45679*********55.....46******************8776665 PP
3AP228.63.7e-093253631051
                   AP2  10 kkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                            k+gr+ +eI+ p     + kr++lg+fg+aeeA  a+   ++
  PGSC0003DMP400021525 325 TKKGRYQSEIKNPI----TkKRIWLGTFGSAEEASHAYQSKKL 363
                           46899****99972....36*****************976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.1294099IPR001471AP2/ERF domain
PfamPF008471.0E-54290IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-84287IPR016177DNA-binding domain
SMARTSM003805.8E-44394IPR001471AP2/ERF domain
CDDcd000186.36E-124380No hitNo description
Gene3DG3DSA:3.30.730.101.8E-104388IPR001471AP2/ERF domain
PROSITE profilePS5103211.258216273IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-9218263IPR016177DNA-binding domain
CDDcd000187.78E-11219256No hitNo description
SMARTSM003800.0095219279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-8219256IPR001471AP2/ERF domain
PROSITE profilePS5103211.917317379IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-9320365IPR016177DNA-binding domain
SMARTSM003802.9E-4326372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-11326365IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDIKEGLSSK KLVVNIKQGM KLESDECNTS TNCNPKAKIS LPGIRRQKNG RYGVELTDPI  60
RHKRVWVGTF DTVEEASQAY SSKKSEFENE KLRQQGNKKS KRIRKTIGMV EVHKRGKYNS  120
EKSEELVNVK QENENVNREI FQTESAGGSE IDFPISNSSN GGTEKRIDLH EIGAVEEAFR  180
IAKEGSRVFK MANVCGTKSS DDCNNTTSCN PEVKVSLIGT RKQKNGRYAA VITDPFTHKR  240
VRLGTFDTVE EASQAYFSKK SEFEKLSQQG NKQNILKKKN CDQIQQLESS SVVVASLESG  300
SGSGRARRID SHKKKTHLIG AHKSTKKGRY QSEIKNPITK KRIWLGTFGS AEEASHAYQS  360
KKLEFQKLVE EKKKQCTYKQ LKSEKLVNLK EGHENVKCEP FLPESAPDID IPFSNSSNGG  420
TVQSIDPDKI GNQSKKFDLE LESNMPIGSS AGEKQEGEED DEDLWTGQWV QLPGDDRAVM  480
FSLKLGLPII DNYGSLLGEF STLDDLSICK TEEGNNYISH SI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312316KKKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021525
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027775191.11e-167uncharacterized protein LOC114078472
TrEMBLM1AW590.0M1AW59_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000317450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-12ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]