PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400020499 | ||||||||
Common Name | LOC102589620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 23230 Da PI: 8.7927 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00034 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ Cgk+F + L H +H PGSC0003DMP400020499 85 YKCSVCGKCFGSYQALGGHKASH 107 9*********9999998888777 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 132 | 154 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k+F++ L H r+H PGSC0003DMP400020499 132 HECSICHKTFPTGQALGGHKRRH 154 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.07E-7 | 84 | 154 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.7E-4 | 84 | 108 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.6E-11 | 85 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.011 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.531 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.5E-13 | 131 | 156 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.847 | 132 | 159 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.035 | 132 | 154 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 134 | 154 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MALEALNSPT TTTPPSLFQF QINTTTQNYL ESWTKSKIRS KRPRSIVMEE QQPIISEDEY 60 LALCLLMLAH SNNNNNNNIT SKNSYKCSVC GKCFGSYQAL GGHKASHRSN RDKVYEQSVV 120 ITSGNAVSGW THECSICHKT FPTGQALGGH KRRHYEGKVT SSSSSLNGVG SVNNFDLNLP 180 ALPEYWSGFR SGEDEVESPH PAKKLRQLF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400020499 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC234112 | 0.0 | AC234112.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 12 clone LE_HBa-95O18, complete sequence. | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342662.1 | 1e-157 | PREDICTED: zinc finger protein ZAT10-like | ||||
Swissprot | Q96289 | 8e-49 | ZAT10_ARATH; Zinc finger protein ZAT10 | ||||
TrEMBL | M1ATU2 | 1e-155 | M1ATU2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400030168 | 1e-156 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA735 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 2e-41 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400020499 |
Entrez Gene | 102589620 |