PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020281
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 259aa    MW: 29099.3 Da    PI: 6.9253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020281genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.4e-0695117123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C++C +sF+++  L  H++ H
  PGSC0003DMP400020281  95 YECHYCFRSFPTSQALGGHQNAH 117
                           99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.38E-693122No hitNo description
PfamPF139123.4E-695119IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.09495122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEKMEREALD FMNVESFSQL PITRPVNEKP IRLFGKEFGG GGGDSTNLTT TATNMSESID  60
NNPFHDEPET NTVNLANCAV KEIHIDKNVE IMRKYECHYC FRSFPTSQAL GGHQNAHKKE  120
RLNAKRPHLQ SSIVHDQPSI YGITNRHRLG EATASTRLTH HHSTWTNINN NTPRFNGNGH  180
NVNIINPING NPLTFWQIPP TVYHNNSSSS DNSNNLVFSN DDLIRTPPMV NVSTNCESNF  240
VYKPKGEVQD HVSLDLHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020281
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442981e-124AC244298.9 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence.
GenBankHG9755221e-124HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362274.11e-150PREDICTED: zinc finger protein 8-like
TrEMBLM1ATE80.0M1ATE8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000297970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14731526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.12e-29C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]