PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020248
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 381aa    MW: 43164.1 Da    PI: 8.5913
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020248genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.86.4e-1087126541
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                           k  rr+++NReAAr+sR RKka+i++Le    + ++Le+e
  PGSC0003DMP400020248  87 KTLRRLAQNREAARKSRIRKKAYIQQLESsriRLAQLEQE 126
                           788************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-780130No hitNo description
SMARTSM003382.5E-983162IPR004827Basic-leucine zipper domain
PfamPF077161.1E-784129IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.15185129IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.06E-787129No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
PfamPF141442.8E-30178252IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MMRPPTLNIF PSQPMHVEPS STKGNAGFVS SGSEKSSEPS IMELSKSKNN VLSTTSGPEP  60
KIPKREWNRK GQNSGSEQNA PKTTDHKTLR RLAQNREAAR KSRIRKKAYI QQLESSRIRL  120
AQLEQELQRA RSQGFHFAGN ALLGGDQGLP NNIGNMTSDA AVFDMEYSRW LEEHHRLMCE  180
LRNAVTEHFP ENDLRIYVEN CVTHYDEMMN LKSMLVKSDV FHLISGMWKT PAERCFIWMG  240
DFRPSELIKI ILSQIEPLTE QQFVGICGLQ QSTQEAEEAL SQGLENLNQS VSDTIVSDAL  300
LANCPQNMAN YMGQMALAIN KLSTIEGFVR QADNLRHQTI HRLHQILTSR QAARCFLAIA  360
EYFHRLRALS SLWVARPRQE *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020248
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362280.10.0PREDICTED: transcription factor TGA2-like
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLM1ATB60.0M1ATB6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000297430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22792145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-172bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]