PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019514
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 446aa    MW: 49401.6 Da    PI: 7.7873
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019514genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17111160155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PGSC0003DMP400019514 111 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 160
                           78*******************......55************************998 PP
2AP239.31.6e-12203253155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV+ +k  grW+A+       g    +k+++lg f+ + +Aa+a+++a+ k +g
  PGSC0003DMP400019514 203 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDNEIDAARAYDKAAIKCNG 253
                           89********.7******...5...334336**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-9111160IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-16111170IPR016177DNA-binding domain
PROSITE profilePS5103217.82112168IPR001471AP2/ERF domain
CDDcd000181.07E-11112170No hitNo description
SMARTSM003805.9E-32112174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-17112168IPR001471AP2/ERF domain
CDDcd000183.05E-24203261No hitNo description
PfamPF008471.7E-7203253IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-16203262IPR016177DNA-binding domain
PROSITE profilePS5103215.106204261IPR001471AP2/ERF domain
SMARTSM003808.3E-31204267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-15204261IPR001471AP2/ERF domain
PRINTSPR003676.8E-6205216IPR001471AP2/ERF domain
PRINTSPR003676.8E-6243263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MENSGTSNSS VVNMETSSTA GDDEYFSSDH RHRDGFTFAI LKADKEANNE YEGSGDRGGF  60
VIKELFPLVN GEVGLDLPAN CGDLTEQRIG KTPQQRLQAK KSRRGPRSRS SQYRGVTFYR  120
RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LDADINFNIS DYEEDLKQMK  180
NFSKEEFVHI LRRQSNGFSR GSSKYRGVTL HKCGRWEARM GQLLGKKYIY LGLFDNEIDA  240
ARAYDKAAIK CNGREAVTNF EPNTYEGALT LEADIGGRDH NLDLNLGISL SSYAENQHGN  300
TSQIGNFQCR HGSNGLPEHH GEVRTPASTT LRSKLLLHGQ HMLTQHPLHW NGSNDNLFPT  360
FKVSAIEKGL EVDASLKWMG HDQNTYDGSP TLPLFSTAAS SGFGNSANTA PSAATHQLHF  420
GSGALPFPHS PSLTNMNLSH HYFRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019514
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448861e-120AC244886.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-19g7 map 10, complete sequence.
GenBankHG9754491e-120HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755221e-120HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339057.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotB8AXC31e-103AP21_ORYSI; APETALA2-like protein 1
TrEMBLM1ARJ40.0M1ARJ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000287060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.36e-98related to AP2.7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]