PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019203
Common NameLOC102585105
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 290aa    MW: 33271.8 Da    PI: 6.7213
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019203genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.59.4e-4851313128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPt+eel+ +yLk+kv gkk ++ +vi  ++iy+++PwdLp+ ++ +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+dk+
  PGSC0003DMP400019203   5 PGFRFHPTEEELLEFYLKNKVLGKKSRC-DVIGLLNIYRHDPWDLPELATIGEREWYFFVPRDRKHGSGGRPNRTTQKGFWKATGSDKK 92 
                           9************************999.99***************8778899************************************ PP

                   NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++     ++ +glkktLvfy+grap+g+ktdWvm+e+rl
  PGSC0003DMP400019203  93 IIGLsnPKNIIGLKKTLVFYTGRAPRGSKTDWVMNEFRL 131
                           *976446778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.6073149IPR003441NAC domain
SuperFamilySSF1019411.7E-554149IPR003441NAC domain
PfamPF023651.6E-265131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEDLPGFRFH PTEEELLEFY LKNKVLGKKS RCDVIGLLNI YRHDPWDLPE LATIGEREWY  60
FFVPRDRKHG SGGRPNRTTQ KGFWKATGSD KKIIGLSNPK NIIGLKKTLV FYTGRAPRGS  120
KTDWVMNEFR LPDTVSSPQD IVLCKIYRKA TSLKVLEQRA AIEEEMNGTK HVHSSPCSTT  180
LQPMDAMSFS NEHHEPTDQS PNFFMSINKD EVEDDILSIT ENNPFEVSAE TKEKSNCFRP  240
KLLNGQDNLA ELQVPKFSMD FSQDPVWMQL RSPWLDNFIL TPSAFVHNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-48514917168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019203
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144030.0BT014403.1 Lycopersicon esculentum clone 133708R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360888.10.0PREDICTED: NAC transcription factor 29
SwissprotQ10S651e-94NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLM1AQT60.0M1AQT6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000281900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35312248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-103NAC domain containing protein 36
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]