PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400019127 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 314aa MW: 35870.2 Da PI: 6.9952 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.4e-14 | 218 | 263 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++Ns+f Lre++P+ +K++Ka+ L Av YI +L PGSC0003DMP400019127 218 NHVEAERQRREKLNSRFYALREVVPNV-----TKMDKATLLSDAVTYITQL 263 799***********************8.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.8E-8 | 15 | 57 | IPR025610 | Transcription factor MYC/MYB N-terminal |
Pfam | PF14215 | 5.1E-28 | 59 | 154 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 1.08E-15 | 214 | 267 | No hit | No description |
PROSITE profile | PS50888 | 16.869 | 214 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-17 | 218 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-11 | 218 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-17 | 218 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-16 | 220 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDEPIFSTSS SPSSLQHRLQ YIFKNQTNYY SDWAYAIFWQ SSNNSLSLTW GDGHLNMKTT 60 NNKDVEWFYL MSLAQCFSVG EGVVGKCFSS DSFVWLTGDQ QFEFCHCERA KEAHYVHGIN 120 TFVYIPISSG VLELGSSTVI KQDLNLVQQV KSLFFGYETI GPIDDFGLFN CLEQYGQEAK 180 KGEIVVGTTP QENKVGFKSK TSKKRGRKGR EICETQGNHV EAERQRREKL NSRFYALREV 240 VPNVTKMDKA TLLSDAVTYI TQLKAKVDEL ESKLHNNYYY SVMEKKHKME NDNVVDNQSS 300 TTSWDHVRSA FFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-21 | 218 | 273 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-21 | 218 | 273 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-21 | 218 | 273 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-21 | 218 | 273 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-21 | 218 | 273 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-21 | 218 | 273 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-21 | 218 | 273 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-21 | 218 | 273 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400019127 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361006.1 | 0.0 | PREDICTED: transcription factor MYC4-like | ||||
TrEMBL | M1AQM6 | 0.0 | M1AQM6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400028057 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 4e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400019127 |
Publications ? help Back to Top | |||
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