PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019126
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 390aa    MW: 44514.3 Da    PI: 6.2396
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019126genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46e-14218263454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er+RR+++Ns+f  Lre++P+      +K++Ka+ L  Av YI +L
  PGSC0003DMP400019126 218 NHVEAERQRREKLNSRFYALREVVPNV-----TKMDKATLLSDAVTYITQL 263
                           799***********************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.2E-81557IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142157.6E-2859154IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000836.06E-15214267No hitNo description
PROSITE profilePS5088816.869214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17218276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-17218275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11218263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDEPIFSTSS SPSSLQHRLQ YIFKNQTNYY SDWAYAIFWQ SSNNSLSLTW GDGHLNMKTT  60
NNKDVEWFYL MSLAQCFSVG EGVVGKCFSS DSFVWLTGDQ QFEFCHCERA KEAHYVHGIN  120
TFVYIPISSG VLELGSSTVI KQDLNLVQQV KSLFFGYETI GPIDDFGLFN CLEQYGQEAK  180
KGEIVVGTTP QENKVGFKSK TSKKRGRKGR EICETQGNHV EAERQRREKL NSRFYALREV  240
VPNVTKMDKA TLLSDAVTYI TQLKAKVDEL ESKLHNNYYY SVMEKKHKME NDNVVDNQSS  300
TTSWDHTMEI EVKMVGQDAM LRVQSENMNY PSTRLMCALQ EVELHVYHAN ISSVNDLMLH  360
DILVKVPQGL ETEDEVKNAL LRSLKQITC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-20218273863Transcription factor MYC2
5gnj_B4e-20218273863Transcription factor MYC2
5gnj_E4e-20218273863Transcription factor MYC2
5gnj_F4e-20218273863Transcription factor MYC2
5gnj_G4e-20218273863Transcription factor MYC2
5gnj_I4e-20218273863Transcription factor MYC2
5gnj_M4e-20218273863Transcription factor MYC2
5gnj_N4e-20218273863Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019126
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361006.10.0PREDICTED: transcription factor MYC4-like
TrEMBLM1AQM50.0M1AQM5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000280570.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-70bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]