PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400018618 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 27571.7 Da PI: 8.7258 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.5e-11 | 66 | 118 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r+ h +Er RR+++ + +++Lr++lP + ++K s + ++Av+YIk+L+ PGSC0003DMP400018618 66 KRVLHRDVERHRRQEMSNLYATLRSHLPYeS---IKGKRSLPDDMQEAVNYIKNLE 118 7999*************************66...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.53E-7 | 63 | 122 | No hit | No description |
SuperFamily | SSF47459 | 1.01E-12 | 64 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.51 | 65 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-8 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-8 | 66 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.002 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDCLSEIFSS KKIKDHDQQQ LIQIPSTPCQ PHHQDLATND PNYKRKRSIS DHKERDSLTR 60 KNSVQKRVLH RDVERHRRQE MSNLYATLRS HLPYESIKGK RSLPDDMQEA VNYIKNLENN 120 IKELEIKRKK LEDLALCSSK EDKHFGDYVT INLCDCGVEI LINEKVPLSR VLEELVKRQL 180 NVVNCVSTKV NERLLHRIQL EVYVCMTISF KNLNSLIDHV LIYNMFLTNK FNVCG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400018618 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-173 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350425.1 | 1e-144 | PREDICTED: transcription factor bHLH118-like | ||||
TrEMBL | M1APG9 | 1e-171 | M1APG9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400027293 | 1e-171 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400018618 |
Publications ? help Back to Top | |||
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