PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400017509

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 356aa MW: 40438.6 Da PI: 6.9302

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400017509	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.7	1.3e-54	22	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeel+++yL+ kv + ++++ i++vd++++ePw+Lp+ +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd PGSC0003DMP400017509 22 LPPGFRFHPTDEELITFYLASKVFNATFSAGIQIPQVDLNRCEPWELPEVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKD 110 79**************************778***********8888999****************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ev+s+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl PGSC0003DMP400017509 111 REVYSAtNGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 150 9978899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-63	14	172	IPR003441	NAC domain
PROSITE profile	PS51005	59.675	22	172	IPR003441	NAC domain
Pfam	PF02365	8.6E-28	23	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MLAMEEILCE LNREEMMNEQ GLPPGFRFHP TDEELITFYL ASKVFNATFS AGIQIPQVDL 60 NRCEPWELPE VAKMGEREWY FFSLRDRKYP TGLRTNRATG AGYWKATGKD REVYSATNGA 120 LLGMKKTLVF YKGRAPRGEK TKWVMHEYRL DGDFSYRYSS KEEWVICRIL HKVGEKKNAI 180 YEGAGGGGGS TYPTLKTWSS SAAVNSPLTT NPKTLQISHN NHYLFQHHEN DLLKSLFNVS 240 QTTNLLPMNN NVAFSSTKRY KDNKQEEEDM TNKNSSNSVV INQQICMKSS QGNYLSSPLC 300 YNNNDQNDAF VMNNSDWSSS LAGMEEGIIP CNYFNNVVMD NCPIKIAAES WPLHL*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MLAMEEILCE LNREEMMNEQ GLPPGFRFHP TDEELITFYL ASKVFNATFS AGIQIPQVDL  60
NRCEPWELPE VAKMGEREWY FFSLRDRKYP TGLRTNRATG AGYWKATGKD REVYSATNGA  120
LLGMKKTLVF YKGRAPRGEK TKWVMHEYRL DGDFSYRYSS KEEWVICRIL HKVGEKKNAI  180
YEGAGGGGGS TYPTLKTWSS SAAVNSPLTT NPKTLQISHN NHYLFQHHEN DLLKSLFNVS  240
QTTNLLPMNN NVAFSSTKRY KDNKQEEEDM TNKNSSNSVV INQQICMKSS QGNYLSSPLC  300
YNNNDQNDAF VMNNSDWSSS LAGMEEGIIP CNYFNNVVMD NCPIKIAAES WPLHL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-50	11	172	6	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-50	11	172	6	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-50	11	172	6	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-50	11	172	6	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-50	11	172	9	168	NAC domain-containing protein 19
3swm_B	2e-50	11	172	9	168	NAC domain-containing protein 19
3swm_C	2e-50	11	172	9	168	NAC domain-containing protein 19
3swm_D	2e-50	11	172	9	168	NAC domain-containing protein 19
3swp_A	2e-50	11	172	9	168	NAC domain-containing protein 19
3swp_B	2e-50	11	172	9	168	NAC domain-containing protein 19
3swp_C	2e-50	11	172	9	168	NAC domain-containing protein 19
3swp_D	2e-50	11	172	9	168	NAC domain-containing protein 19
4dul_A	2e-50	11	172	6	165	NAC domain-containing protein 19
4dul_B	2e-50	11	172	6	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400017509

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF439374	0.0	JF439374.1 Solanum chacoense cup-shaped cotlyedon 3 (CUC3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001275002.1	0.0	CUP-SHAPED COTYLEDON3
Swissprot	Q9S851	9e-97	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	M1ALV6	0.0	M1ALV6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400025690	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	2e-99	NAC family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400017509

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]