PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017257
Common NameLOC102592438
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 1115aa    MW: 123656 Da    PI: 6.551
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017257genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.96.7e-22138239199
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F 
  PGSC0003DMP400017257 138 FCKTLTASDTSTHGGFSVPRRSAEKIfppldySMQPPA-QELVARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI 225
                           99*****************************9545444.38************************************************ PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                             ++++++l+++++r+
  PGSC0003DMP400017257 226 --RDEKQQLLLGIRRA 239
                           ..5688889****997 PP
2Auxin_resp119.52.7e-39264347183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  PGSC0003DMP400017257 264 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKATYsCQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 347
                           79******************************999879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-43128267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-40132253IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-18137229No hitNo description
PROSITE profilePS5086311.829138240IPR003340B3 DNA binding domain
SMARTSM010196.8E-22138240IPR003340B3 DNA binding domain
PfamPF023621.5E-19138239IPR003340B3 DNA binding domain
PfamPF065071.5E-34264347IPR010525Auxin response factor
PROSITE profilePS5174527.45710031087IPR000270PB1 domain
PfamPF023091.5E-610041088IPR033389AUX/IAA domain
SuperFamilySSF542774.12E-610071081No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1115 aa     Download sequence    Send to blast
MKTPANTAGV QQQQQHTVNG NHPAEVEKKS INPELWQACA GPLVNLPAAG THVVYFPQGH  60
SEQVAASMKK DVDAQIPNYP NLPSKLVCLL HNITLHADPE TDEVYAQMTL QPVPSFDKEA  120
LLRSDLSMKL NKPQTEFFCK TLTASDTSTH GGFSVPRRSA EKIFPPLDYS MQPPAQELVA  180
RDLHDNLWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ QLLLGIRRAN  240
RQPTNLSSSV LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RASPSEFVIP LAKYYKATYS  300
CQVSLGMRFR MMFETEESGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW DESTAGERRN  360
RVSIWEIEPV TAPFFICPTP PFFRSKRPRL PGMPDDDCSD LDGLFKRTMP WLGDDFGMKD  420
PQGLPGLSLV QWMNMQQNPS LANSMQPNYL HSLSGSVLQN VGGGADLSRQ LGLPAPQLPQ  480
QNTLQFGAQR PTQQVQQLDQ LQKLPTTTLS PAGSIMQSQQ QLSDISQQPR QNLINQSVPT  540
NHVQAQLLQA QSLVQSQNVL QQQQSFQNQL QRNLPQNLPQ QQQIMNQTQQ QSFMPPQPND  600
PLNQQLHFSD NQLQMQLLQK LQQQSLLAQQ SLLQQPSQLM PIQDQQKHID VSQNFSRSLA  660
TSQMLDMSQT TSTSTTLSQP QVAQQQMTIN NSQSNLRFAQ PNQHMKQQQQ QQPGILPEIP  720
GQVGQILPPT TNQLSANCSS FLTGAVGGGQ SVVTDDIPSC STSPSTNNCQ NVVQPIMNGR  780
IHRGTAAADE TTQSSLPLLS SSGLEAMSPN RNLVKDLQQK PDVKPSLNIS KSQNHGFSTP  840
QTYLNTAVPQ MDYLDSSSSA TSVYFSQNDV QLQQTTNPMS FSSQAVVFRD SQDGEVQGDP  900
RNSVAFGANM DNQLGISMMP DSLITNSLVG SRKDVSNNIS SGGGMLSSYE NPKDAQPELS  960
SSIVSQSFGV PDMAFNSIDS TINEGSFMNR GAWAPPPQMP RMRTFTKVHK RGAVGRSIDI  1020
TRYSGYEELK QDLARRFGIE GQLEDRQRIG WKLVYVDHEN DDLLVGDDPW EEFVNCVRCI  1080
KILSPQEVQQ MSLDGDFGYN VQNQAFSSSD GGNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1672736847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017257
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1305440.0HM130544.1 Solanum lycopersicum auxin response factor 19 (ARF19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365636.10.0PREDICTED: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM1ALA40.0M1ALA4_SOLTU; Auxin response factor
STRINGPGSC0003DMT4000253120.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]