PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400017131 | ||||||||
Common Name | LOC102593379 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 319aa MW: 36166.1 Da PI: 7.0027 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.2 | 1.7e-33 | 173 | 230 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+ PGSC0003DMP400017131 173 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCQVKKRVERSYQDPSIVITTYEGQHNHH 230 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-35 | 158 | 232 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-29 | 164 | 232 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.42 | 167 | 232 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-39 | 172 | 231 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-26 | 173 | 230 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MGDELRDLYY HQPFQEDIRH DSSMVQNIHM LDPSFMSYTS EYLHGSSSDY ITNNSLGKPF 60 GFSTPSPLSS LKDDDIIKQD HVDANVNYIN NNDVVGGGGG SETPVTPNSS ISNSSSNGDH 120 EDSNKKDKQV KDETLEDGED ASKKESKAKK KGEKKQRPPK FAFMTKSEVD HLEDGYRWRK 180 YGQKAVKNSP YPRSYYRCTS QKCQVKKRVE RSYQDPSIVI TTYEGQHNHH LPATLRGSVA 240 RMLNPSMLAQ PSPLMAPQAS FHQEFIMSQM PQFYGHANAF ANSSMYHHQQ QMQLPHPHHD 300 YGLLQDMVPS MFNLKQEP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-27 | 165 | 233 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-27 | 165 | 233 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400017131 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-180 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006355604.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
TrEMBL | M1AL07 | 0.0 | M1AL07_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400025113 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 4e-55 | WRKY DNA-binding protein 71 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400017131 |
Entrez Gene | 102593379 |
Publications ? help Back to Top | |||
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