PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016858
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 284aa    MW: 32957.9 Da    PI: 9.6304
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016858genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-131696999
                          HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                            +k+g + +p  f+ ++ +g   e+++  +  + g++W++kl  + ++   +  ++W +Fv++n+L+ gD +vF+++g++ef   v+vf+
  PGSC0003DMP400016858 16 PGFKNG-IKIPIGFL-KYlKGY--EHIKRAVLKRGGKKWRIKL--NEHR---FEDGNWGKFVEENDLQLGDLLVFRHEGNMEF--EVSVFD 95
                          556666.99*****9.564555..4567788899*********..8887...67899*********************99999..999998 PP

                          S CS
                    B3 99 k 99
                          +
  PGSC0003DMP400016858 96 S 96
                          6 PP
2B347.14.4e-15143221687
                           ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           ++++ l+++ ++lp kfa+++g+++++   l+++de+ rsW++kl    + +++++++ W e  +an++kegD ++Fk++ +
  PGSC0003DMP400016858 143 VRAYCLSKCYFRLPGKFARANGLINKK-CSLIIRDEKRRSWSLKL--YTSYSQVYIGGRWAELRDANDIKEGDHITFKVVAN 221
                           568999***************888544.58***************..66667889***********************7754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-19399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-195103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.788797IPR003340B3 DNA binding domain
CDDcd100177.51E-15895No hitNo description
SMARTSM010193.7E-131097IPR003340B3 DNA binding domain
PfamPF023621.6E-101896IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-14133229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-16136236IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-8138232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.011138232IPR003340B3 DNA binding domain
PfamPF023623.5E-13142222IPR003340B3 DNA binding domain
CDDcd100171.32E-12146217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MKIPSKKPHF FKPILPGFKN GIKIPIGFLK YLKGYEHIKR AVLKRGGKKW RIKLNEHRFE  60
DGNWGKFVEE NDLQLGDLLV FRHEGNMEFE VSVFDSSHCD REYAEYLQEE GEGGRARTVE  120
EISKEFEFKE AATRNQSHVV CKVRAYCLSK CYFRLPGKFA RANGLINKKC SLIIRDEKRR  180
SWSLKLYTSY SQVYIGGRWA ELRDANDIKE GDHITFKVVA NGEMPIWEFH TNVTEKSKCN  240
IMSSHEAFRN IEAAKNIPLS HPHFVCTMKS YYLSKCSLVS CRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016858
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-153HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357038.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X4
RefseqXP_015168733.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
RefseqXP_015168734.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X2
RefseqXP_015168735.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X3
TrEMBLM1AKH30.0M1AKH3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000246730.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-35B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]