PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400016848 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 210aa MW: 25244.9 Da PI: 9.4081 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.1 | 6.4e-13 | 5 | 75 | 18 | 98 |
--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +pk f+ ++ + k + + + + g++W+vk+ ++++ l++GW++F ++++L +D++vF+++g++ef v++f+ PGSC0003DMP400016848 5 IPKGFL-KYlK--KYDQYEHAILRRAGKKWRVKV--NGRR----LEDGWEKFSDQHDLHLRDILVFRHEGDMEF--EVSIFN 75 899999.6632..345567788899*********..8888....************************999999..888775 PP | |||||||
2 | B3 | 54.8 | 1.7e-17 | 114 | 199 | 5 | 92 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ++++ l+++ l +pk+fa+++g+ ++++++l ++de+ rsW+vkl r ++++ ++l +GW++ +an L egD ++F+++ s+ ++ PGSC0003DMP400016848 114 IVRPYCLSRDALLVPKEFASRNGLFNTKERDLLVRDERQRSWNVKL--RSYGDSvVYLIDGWNKIRDANCLMEGDCIMFEVVT-SGNKP 199 5678999***************99999999****************..888777789999********************765.45444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.478 | 1 | 77 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.9E-5 | 1 | 77 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-15 | 4 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-14 | 4 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-9 | 5 | 75 | No hit | No description |
Pfam | PF02362 | 5.8E-10 | 5 | 75 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-17 | 104 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.63E-18 | 107 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.731 | 110 | 206 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.5E-14 | 111 | 206 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-14 | 114 | 201 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.91E-11 | 118 | 191 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MLQKIPKGFL KYLKKYDQYE HAILRRAGKK WRVKVNGRRL EDGWEKFSDQ HDLHLRDILV 60 FRHEGDMEFE VSIFNLNQQC EREYEYKYEY EYESKDKPNH NIKSSRKASH FVCIVRPYCL 120 SRDALLVPKE FASRNGLFNT KERDLLVRDE RQRSWNVKLR SYGDSVVYLI DGWNKIRDAN 180 CLMEGDCIMF EVVTSGNKPI WKFKRMTEQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400016848 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016436844.1 | 2e-80 | PREDICTED: B3 domain-containing protein REM17-like | ||||
TrEMBL | M1AKG6 | 1e-154 | M1AKG6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400024648 | 1e-155 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 3e-28 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400016848 |
Publications ? help Back to Top | |||
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