PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400016389 | ||||||||
Common Name | LOC102591142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 220aa MW: 23994.3 Da PI: 10.3112 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 201.7 | 7.9e-62 | 55 | 219 | 133 | 301 |
GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrq 221 +++ ++++ +k+kk++ k+ r+++ k++++++ks++skk++ ++++ + k+ + v + D s+lP+P CsCtG++r+ PGSC0003DMP400016389 55 VKFK-AKSQKMKKNKKTSMKGIRETVSELLKEERPENKSSASKKTKGEARCG--EATVTKNPNPVYGRANADFSGLPPPFCSCTGVSRR 140 2222.22233333333344444555555555555555555555555555543..77889999999************************ PP GAGA_bind 222 CYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 CYk G GGWqS+CCtt++SvyPLP ++ ++g R agrKmS+ga++klL La+eG+dlsnpvDLkdhWAkHG nkf+t++ PGSC0003DMP400016389 141 CYKCG-GGWQSSCCTTSLSVYPLPFNPSKPGNRKAGRKMSNGAYNKLLCTLATEGHDLSNPVDLKDHWAKHGSNKFITLK 219 ***99.9***********************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 7.5E-38 | 1 | 219 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.8E-55 | 35 | 219 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MASQVNHKEG TFDSHFPWIH RDNFPPATKF GSESKPCAAV PIRSVAPTGE QNVDVKFKAK 60 SQKMKKNKKT SMKGIRETVS ELLKEERPEN KSSASKKTKG EARCGEATVT KNPNPVYGRA 120 NADFSGLPPP FCSCTGVSRR CYKCGGGWQS SCCTTSLSVY PLPFNPSKPG NRKAGRKMSN 180 GAYNKLLCTL ATEGHDLSNP VDLKDHWAKH GSNKFITLK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400016389 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009521 | 0.0 | AP009521.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0068N03, complete sequence. | |||
GenBank | AP010257 | 0.0 | AP010257.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0172P19, complete sequence. | |||
GenBank | AP010798 | 0.0 | AP010798.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0011I05, complete sequence. | |||
GenBank | FJ982306 | 0.0 | FJ982306.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds. | |||
GenBank | FJ982307 | 0.0 | FJ982307.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC3) gene, complete cds. | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352921.1 | 1e-163 | PREDICTED: protein BASIC PENTACYSTEINE7-like | ||||
Swissprot | O82286 | 2e-47 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | M1AJB5 | 1e-162 | M1AJB5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400024019 | 1e-162 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13714 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.4 | 4e-49 | basic pentacysteine 7 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400016389 |
Entrez Gene | 102591142 |
Publications ? help Back to Top | |||
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