PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015994
Common NameLOC102604302
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 378aa    MW: 43048.6 Da    PI: 6.9282
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015994genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005179101323
                           ET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                           C+   Cgk+F +   L++H   H
  PGSC0003DMP400015994  79 CSyeGCGKTFIDAGALRKHSHIH 101
                           77779**************7766 PP
2zf-C2H216.42.5e-05106130123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           y+C+   Cgk F ++s LkrH   H
  PGSC0003DMP400015994 106 YVCHyeGCGKKFLDSSKLKRHFLIH 130
                           9********************8877 PP
3zf-C2H222.33.3e-07136160123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           y+Cp   Cgk Fs   nL++H++tH
  PGSC0003DMP400015994 136 YVCPheGCGKAFSLDFNLRSHMKTH 160
                           99**********************9 PP
4zf-C2H216.32.8e-05166191123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                           + Cp   Cgk++ + + Lk+Hi++ H
  PGSC0003DMP400015994 166 HICPypECGKRYAHEYKLKNHISStH 191
                           679999****************9988 PP
5zf-C2H216.13.2e-05235260123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                           y+Cp   C+ks+ + + L+ H+r+ H
  PGSC0003DMP400015994 235 YSCPyeGCDKSYIHEYKLNLHLRNmH 260
                           99*********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.4E-1472103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
SMARTSM003550.003277101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576675.53E-880130No hitNo description
Gene3DG3DSA:3.30.160.602.4E-14104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.921106135IPR007087Zinc finger, C2H2
SMARTSM003550.0024106130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576672.91E-14117169No hitNo description
Gene3DG3DSA:3.30.160.602.1E-20127161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.882136165IPR007087Zinc finger, C2H2
SMARTSM003551.7E-4136160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-7162192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.031166191IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847166196IPR007087Zinc finger, C2H2
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-8229257IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.01E-5230265No hitNo description
PROSITE profilePS5015711.344235265IPR007087Zinc finger, C2H2
SMARTSM003558.2E-4235260IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280237260IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
METHMSHHQY ERRPIYKSKA PASKWFKEWV PQDVVATGGK CYVLKWVNEA TLKALKEKPK  60
EAGVPVSEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS  120
SKLKRHFLIH TGERDYVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE  180
YKLKNHISST HQKNNTPDAH AHAHAPKYTP PVEKPVKTPK SSSAAYGSSS SDRPYSCPYE  240
GCDKSYIHEY KLNLHLRNMH PGHFPEENAR NVQSTADNEM DEGSDQDAYA ARRGNGRIQK  300
QSRPKPSLKQ PPLKVARKSS SSAAQVNLSI SKKPWPIKEE NFNEEDSEET EEERDDVGDG  360
WRYGENDDDD EETEEDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C9e-34791938119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015994
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350548.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-150YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLM1AIE20.0M1AIE2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000234590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-139C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]