PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400014338

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C3H

Protein Properties

Length: 702aa MW: 76411.8 Da PI: 7.053

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400014338	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.9e-07	278	298	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg PGSC0003DMP400014338 278 PCPEFRK-GACRRGDMCEYAHG 298 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	7.4E-20	9	162	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.75E-19	15	137	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.9E-11	51	126	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	18.988	57	133	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	8.0E-4	57	87	IPR002110	Ankyrin repeat
CDD	cd00204	5.98E-18	57	146	No hit	No description
PRINTS	PR01415	3.9E-5	58	73	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.823	92	127	IPR002110	Ankyrin repeat
SMART	SM00248	2.9E-4	92	124	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.9E-5	111	125	IPR002110	Ankyrin repeat
SMART	SM00248	3400	128	163	IPR002110	Ankyrin repeat
SMART	SM00356	9.5E-6	273	299	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	278	300	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	278	298	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-4	306	336	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	54	308	331	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MNHLTVETED TLASLLEIAS NNDIDAFKRW IEHDLSSVHE VGLWYGRQKG SRQMVLEHRT 60 PLMVAAMYGS IDVLKLILSL AGVDVNRSCG RDNSTALHCA ASGGSLNAVD AVKLLLEAGA 120 DPNFKDAYGH RPLDVLVISL KDHTMKSCLE NLLKTDGMGD CNLRVSMASS NSNSPPLSPS 180 LGNISPSSAS DTTSSPRSAK SNDLPVPSPP EKKEYPIDPS LPDIKNSIYS TDEFRMFSFK 240 IKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGACRRG DMCEYAHGVF 300 ECWLHPAQYR TRLCKDGTNC DRRVCFFAHM QEELRPLYVS TGSAVLSPRS NASAANAMDF 360 AAAMGLIPGS PSSVSVMSPS PFTPPMSPSA NGVSNMGWPP QNVPALHLPG SNLQSSRLRS 420 SLNARDIPAK DLTMLSDFDV QQQQLLNGLS CLSQSSMSAN SFNRSVRPKT LTPSNLEDLF 480 SAEGSSPRFS DQALSQAVFS PTHKSAVFNQ YLQQQKAMLS PINTNFSPRN VDNPLLQGSF 540 GVPSSRSMSP RGMEPISPMS SRVSMLAQGD KQHQFRSLSS RDLGSSAASA IAGSPIDTWS 600 NWGIAPGKPD WAVNSEEFGR LRRSSSFELA NNGEEPDLSW VQSLVKESPQ EAKNKSASRA 660 SGLTVSGADI SEGSTSGSQI EQYDQLGAWM EQMKLDQLIA R*

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MNHLTVETED TLASLLEIAS NNDIDAFKRW IEHDLSSVHE VGLWYGRQKG SRQMVLEHRT  60
PLMVAAMYGS IDVLKLILSL AGVDVNRSCG RDNSTALHCA ASGGSLNAVD AVKLLLEAGA  120
DPNFKDAYGH RPLDVLVISL KDHTMKSCLE NLLKTDGMGD CNLRVSMASS NSNSPPLSPS  180
LGNISPSSAS DTTSSPRSAK SNDLPVPSPP EKKEYPIDPS LPDIKNSIYS TDEFRMFSFK  240
IKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGACRRG DMCEYAHGVF  300
ECWLHPAQYR TRLCKDGTNC DRRVCFFAHM QEELRPLYVS TGSAVLSPRS NASAANAMDF  360
AAAMGLIPGS PSSVSVMSPS PFTPPMSPSA NGVSNMGWPP QNVPALHLPG SNLQSSRLRS  420
SLNARDIPAK DLTMLSDFDV QQQQLLNGLS CLSQSSMSAN SFNRSVRPKT LTPSNLEDLF  480
SAEGSSPRFS DQALSQAVFS PTHKSAVFNQ YLQQQKAMLS PINTNFSPRN VDNPLLQGSF  540
GVPSSRSMSP RGMEPISPMS SRVSMLAQGD KQHQFRSLSS RDLGSSAASA IAGSPIDTWS  600
NWGIAPGKPD WAVNSEEFGR LRRSSSFELA NNGEEPDLSW VQSLVKESPQ EAKNKSASRA  660
SGLTVSGADI SEGSTSGSQI EQYDQLGAWM EQMKLDQLIA R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400014338

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351223.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_015165890.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_015165891.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	M1AEI8	0.0	M1AEI8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400021056	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400014338

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]