PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400013984 | ||||||||
Common Name | LOC102591368 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 273aa MW: 30095.8 Da PI: 6.0347 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93.4 | 3.7e-29 | 9 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppG rF P+d++l+++yL k +++ ++ i+e+d+y+++P +Lp ++ +e++ ++F+ ++ + +r + gyW PGSC0003DMP400013984 9 LPPGTRFYPSDQQLISYYLSSKNGADHrnGAGFDLIREIDLYNFDPFNLPDsacfRYGRGERKRHWFCFVARVLKG---GRRRAGGGYW 94 79********************8877743344578**************944676444455555555555554432...2445689*** PP NAM 84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ gk ++v+++ ++ +vg++k++ fy ++ +ktdW+mhey+l PGSC0003DMP400013984 95 KKRGKVRDVVDAgaGKVVVGTRKSFDFY---LEDCTKTDWLMHEYAL 138 ***********9777788**********...566789********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-34 | 7 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.601 | 9 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-19 | 10 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGDTTPFSLP PGTRFYPSDQ QLISYYLSSK NGADHRNGAG FDLIREIDLY NFDPFNLPDS 60 ACFRYGRGER KRHWFCFVAR VLKGGRRRAG GGYWKKRGKV RDVVDAGAGK VVVGTRKSFD 120 FYLEDCTKTD WLMHEYALTG HPLASFVLCR VFIKSHHGNN LSGHIFSSNG EEIDATVRHI 180 GIQFDGSAAS VTGSKMHDEN TIDQENDVSK LPSGLVTDLN GQVVAENVAK QICLESDGSP 240 VLNDFSAQEL IAILEGDFIE LDDLLCPLPG IN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-24 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-24 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-24 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-24 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-24 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-24 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-24 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-24 | 5 | 160 | 16 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 91 | GGRRRAGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400013984 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354948.2 | 0.0 | PREDICTED: NAC domain-containing protein 19-like | ||||
TrEMBL | M1ADM7 | 0.0 | M1ADM7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400020527 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13528 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 8e-23 | NAC domain containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400013984 |
Entrez Gene | 102591368 |
Publications ? help Back to Top | |||
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