PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013796
Common NameLOC102592581
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 383aa    MW: 39561.6 Da    PI: 6.7036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013796genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.8e-12197242555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y++ Lq
  PGSC0003DMP400013796 197 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVRFLQ 242
                           99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.36E-13190246No hitNo description
SuperFamilySSF474591.03E-16190252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.193192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16194251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-9197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MQAMNSFQST GENGASSGEH ISHSHFDPSS SHDDFLQQIL SSVPSSSPWP EISGDGHPYN  60
FDDHQSTLLA SKLRQHQING GSSAAAAAKA LMLQQQLLLS RGIAGNGGSG MNGDQNDDGL  120
NPGNDISVQA LYNGFAGSLG QTSNQSQHFH HSQAQSFGAP AASLTMNQTP AASGSAGGAQ  180
PKQQKVRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP NANKTDKASM LDEIIDYVRF  240
LQLQVKVLSM SRLGGAAAVA PLVADRSSEG GGDCVQGNGG RGGSNGTTSS ANNDSSMTMT  300
EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTSTC HSMKPNNPLL LGGGSAINGG  360
GPSSPTLSAS TVQSATMGNG GT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013796
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-171HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-171HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350094.10.0PREDICTED: transcription factor bHLH66
SwissprotQ9ZUG96e-91BH066_ARATH; Transcription factor bHLH66
TrEMBLM1AD590.0M1AD59_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000202440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.14e-57LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]