PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013372
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 215aa    MW: 24405.1 Da    PI: 8.9863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013372genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-114797254
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          +  h  +Er+RR+++   ++ Lr+llP       ++K s ++   +Av+YIk++
  PGSC0003DMP400013372 47 KIIHRDIERQRRQEMAALYSSLRSLLPLqY---VKGKRSVSDHMHEAVNYIKEM 97
                          56699***********************66...9******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.08E-84498No hitNo description
PROSITE profilePS5088813.2624597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1246115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1047111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-84797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDFASMDTTR THIPPNTNSQ KKRISKRKLN TNKEDGIASD DHFKLRKIIH RDIERQRRQE  60
MAALYSSLRS LLPLQYVKGK RSVSDHMHEA VNYIKEMEGN IKELEKQRDL LMIPNSIRHG  120
AENDSRFTDC TVTVSPCLQG GVQISISVDC KGKIFPLSRI LGELLKQGLN MVSCVSAKAD  180
QRSLYTIHTE ACDMNNIDHL ALQQKVIDMI NLDL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12128KRISKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013372
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754426e-93HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362689.11e-158PREDICTED: transcription factor bHLH36-like
TrEMBLM1AC861e-157M1AC86_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000195501e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-38bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]