PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400013100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 89aa MW: 9304.16 Da PI: 6.2222 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 42.2 | 1.8e-13 | 46 | 70 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+rlrWt+eLHerFv+av+qLGG++ PGSC0003DMP400013100 46 KQRLRWTNELHERFVDAVAQLGGPD 70 79*********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.52E-5 | 45 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-11 | 45 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-9 | 46 | 71 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 89 aa Download sequence Send to blast |
MYQPKGVPSS SLAHSNAAVD SQSLDCGGGS MDPTGGGNNN SSLASKQRLR WTNELHERFV 60 DAVAQLGGPD SKFQDFHFVQ PSPPAYGP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400013100 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 1e-114 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349121.1 | 2e-43 | PREDICTED: myb family transcription factor APL-like | ||||
Refseq | XP_006349122.1 | 2e-43 | PREDICTED: myb family transcription factor APL-like | ||||
Refseq | XP_015164958.1 | 2e-43 | PREDICTED: myb family transcription factor APL-like | ||||
TrEMBL | M1ABL6 | 1e-58 | M1ABL6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400019099 | 9e-43 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 4e-15 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400013100 |
Publications ? help Back to Top | |||
---|---|---|---|
|