PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400013099 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 114aa MW: 12129.6 Da PI: 9.8601 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 110.8 | 6.8e-35 | 46 | 100 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl PGSC0003DMP400013099 46 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 100 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.337 | 43 | 103 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.48E-19 | 45 | 101 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-33 | 45 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-27 | 46 | 101 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-10 | 48 | 99 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MYQPKGVPSS SLAHSNAAVD SQSLDCGGGS MDPTGGGNNN SSLASKQRLR WTNELHERFV 60 DAVAQLGGPD RATPKGVLRV MGVQGLTIYH VKSHLQKYRL AKYLPDSSSD GRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-27 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-27 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-27 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-27 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400013099 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 1e-100 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349121.1 | 2e-76 | PREDICTED: myb family transcription factor APL-like | ||||
Refseq | XP_006349122.1 | 2e-76 | PREDICTED: myb family transcription factor APL-like | ||||
Refseq | XP_015164958.1 | 2e-76 | PREDICTED: myb family transcription factor APL-like | ||||
Swissprot | Q9SJW0 | 5e-44 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | M1ABL5 | 4e-78 | M1ABL5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400019099 | 7e-76 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-46 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400013099 |
Publications ? help Back to Top | |||
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