PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012607
Common NameLOC102604176
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 327aa    MW: 37474.4 Da    PI: 8.4822
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012607genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.6e-06160179120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           + C++C+k+F+r  n++ H+
  PGSC0003DMP400012607 160 FACNICNKTFNRYNNMQMHM 179
                           78*****************9 PP
2zf-C2H216.72e-05244266123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C +Cgk+F  k + ++H +++
  PGSC0003DMP400012607 244 FSCRKCGKTFAVKGDWRTHEKNC 266
                           89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-5151183No hitNo description
PfamPF139123.4E-4160179IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.783160187IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-6160179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.095160182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
SuperFamilySSF576674.28E-5230264No hitNo description
Gene3DG3DSA:3.30.160.604.6E-4230264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808244264IPR007087Zinc finger, C2H2
SMARTSM0035532244264IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGIRDINFHV HQDNMDVCFD QTPNFIEWLK PSSNNSSPSS SSSSTIIQSN PMTTFLKLPH  60
LYNPQEIQCL PLLSKLTDPK TEKKEEDYQV MKEENMEKVR VSLHIGLPDV DETKPFSSYK  120
KEEENKEKNS TIINKGCNFN SESRFWIPTP AQILVGPMQF ACNICNKTFN RYNNMQMHMW  180
GHGSEYRKGP ESLRGTQPAA MLRLPCYCCA QECKNNINHP RAKPLKDFRT LQTHYKRKHG  240
TKSFSCRKCG KTFAVKGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIRS FGKGHSPHPS  300
LDGFQDKYCI NSSTGGSSDD DDDEVN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012607
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347241.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-119ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLM1AAE80.0M1AAE8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000183080.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-116WIP domain protein 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]