PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012579
Common NameLOC107060817
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 225aa    MW: 25831.7 Da    PI: 6.7953
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012579genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-0879125654
                           HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           + +E++RR+++ + +++Lr l+P+       +K   ++ Le+ v+Y+k+L
  PGSC0003DMP400012579  79 KDVEKQRRRDMAKLYQRLRLLIPSkY---LMGKRAISDHLEEIVDYVKDL 125
                           689*********************77...999****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-972142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.19873125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-778141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-679125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-680130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDDLELDFGQ LDHLLDFFSP PPPPCSTGTF HQKQDSSIIS LQTQNSNDEK KSIITTTIID  60
DDRIQDPPKE KEKKKIIRKD VEKQRRRDMA KLYQRLRLLI PSKYLMGKRA ISDHLEEIVD  120
YVKDLKENIE DLERKREKLK NTIYSDDDED KIIVKLCNDQ VEISIKGGLS LSKVLKVLVK  180
EGLMVNSCVS SIVDHNLHHI IQSKVNTRGD FDLAMLQSKL MSLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012579
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755191e-104HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164649.11e-160PREDICTED: transcription factor bHLH120-like isoform X1
TrEMBLM1AAC21e-159M1AAC2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000182741e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128311118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-15bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]