PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012418
Common NameLOC102601015
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 579aa    MW: 64285.9 Da    PI: 7.7976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012418genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11431477455
                           HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I ++q
  PGSC0003DMP400012418 431 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAHITDMQ 477
                           799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-5445233IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.056427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16430491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-12430481No hitNo description
PfamPF000104.2E-9431477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-16431490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-15433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MTMLWSDEDK TMVAAVLGTK AFDYLMSSLV SAECSLMAMG SDENLQNKLS DLVERPNASN  60
FSWNYAIFWQ ISRSKLGELV LGWGDGCCRE AREGEESELT RILNLRLADE AQQRMRKRVL  120
QKLHMFFGGT DEDNYVFGLD KVTDTEMFFL ASMYFSFPRG QGGPGKCFSA GKHVWLSDIM  180
RSSVDYCSRS FLMKSAGMQT VVLIPTDIGV VELGSVRTIP ESLELVHSIK SCFSSFLAQV  240
RAKQAASVAD VAEKKNGSNS MFPSSFPFEQ SKGNPKIFGQ NLKSGSTEFR EKLAVRKPVD  300
RPLEMYRNGN RAPIINTQNG VRPVAWASFG NVKPGNSVEL YSPQAPPNNL REFVNGGREE  360
LRLNSLQHQK PGRMQIDFTH SRPVVSPVPT VESEHSDVEV SCKENHAGPA DERRPRKRGR  420
KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AHITDMQKRI  480
RDTENELERL GSTSVDAADI NIEAASDEVI VRASCPLGTH PVAKIVEAFK ETQVSVLESK  540
LAVGNDTVYH TFVVKSSGSE QLTKEKLMAA FSGESNSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-28425486263Transcription factor MYC2
5gnj_B8e-28425486263Transcription factor MYC2
5gnj_E8e-28425486263Transcription factor MYC2
5gnj_F8e-28425486263Transcription factor MYC2
5gnj_G8e-28425486263Transcription factor MYC2
5gnj_I8e-28425486263Transcription factor MYC2
5gnj_M8e-28425486263Transcription factor MYC2
5gnj_N8e-28425486263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412420RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012418
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345551.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7HES40.0MTB2_SOLLC; Transcription factor MTB2
TrEMBLM1A9Y40.0M1A9Y4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000180460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]