PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012054
Common NameLOC102591764
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 731aa    MW: 79277.7 Da    PI: 6.3964
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012054genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07302322526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+ f++ G C++Gd C +aHg
  PGSC0003DMP400012054 302 PCPEFRK-GACRRGDMCEYAHG 322
                           8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.95E-1630157IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-1065147IPR020683Ankyrin repeat-containing domain
CDDcd002041.20E-1477156No hitNo description
Gene3DG3DSA:1.25.40.203.6E-1777157IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.06978186IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003378108IPR002110Ankyrin repeat
PRINTSPR014153.4E-57994IPR002110Ankyrin repeat
PROSITE profilePS5008811.808113148IPR002110Ankyrin repeat
SMARTSM002482.9E-4113145IPR002110Ankyrin repeat
PRINTSPR014153.4E-5132146IPR002110Ankyrin repeat
SMARTSM003569.5E-6297323IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4302322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981302324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4330360IPR000571Zinc finger, CCCH-type
SMARTSM0035681332355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MCTGPERPNQ SVTDSTSSMK GITKLTVETE DSFSSLLELA ANNDLDGFKR SVELDASAID  60
EVGLWLVRKK GAKQIVNEER TPLMVAATYG SLDVLKLIIS NPVVDVNRVC GPNKCTALHC  120
ATSSGSVNAV DAVKLLLSAG ADPNVEDANG QRPADVIVVP PKLPGARASL EELLLNNSSD  180
GSVGDCKLRV SVATSDASSP ILSPSPENGS PSSLESSSSP MALKFSDIPA NSAREKKEYP  240
IDPSLPDIQN SIYSTDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC  300
VPCPEFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCARRICF FAHTTEELRP  360
LYVSTGSAVP SPRSAASAAS VMDMAAALNL FPGSPSAHSV MSPSAFNQPM SPSANGMSHS  420
PAPWPQPNVP TLHLPGSNLQ SSRLRSSLSA RDIPPEDFNM LQDFDAQQLV FNDMACYSQQ  480
RPNSASLNRS GRSKTLTPSN LEELFSAEMN SSPRFSDQAA ACGVFSPSHK SAYFNQFQQQ  540
QNMLSPINTN VFSPKNIEHP LLQASFGVSS PGRMSPRSME PISPMSARLS AFVQREKQQQ  600
QQQQQLRSLS SRDLGSNNVS IVGSPVGNSW SNWGSPNEKV DWSVNGNGLG HLPRSSSFEQ  660
LNNGEEPDLS WVQSLVKESP TEMKEKQAAP NSVAAPSGEK SLKNSSQIDS VDHSVLGAWL  720
EQMQLDQLVA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012054
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345451.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_006345452.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLM1A9250.0M1A925_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000175450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]