PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400011254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bZIP | ||||||||
Protein Properties | Length: 356aa MW: 40059.5 Da PI: 6.3778 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35 | 3.2e-11 | 69 | 104 | 5 | 40 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k+ rr+++NReAAr+sR+RKka++++Le+ +L + PGSC0003DMP400011254 69 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQ 104 788*************************86555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.6E-5 | 65 | 125 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.691 | 67 | 109 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.0E-8 | 69 | 99 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.25E-6 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-7 | 71 | 112 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 72 | 87 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.5E-30 | 156 | 231 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGICEPIHQM GMWDDFNASC PSTSATMILE VEKCLEDQIP IMIETEDTSH GTVGTSNRYE 60 AETSKPIEKV LRRLAQNREA ARKSRLRKKA YVQQLENSKL KLIQLEQELD RARKQGLHVG 120 AGLDASQLSY SGTASSGTAV FDTEYGQWVE EQNRQTNDLR NALHHSQISE AELRIIVDGC 180 LNHYFELFRV KATAAKADVL YIMSGMWKTS AERFFMWIGG FRPSELLKVL TPHPELLTEQ 240 QLREVCNLRQ SCQQAEDALS QGMVKLHQIL GEAVAAGRLG EGNYSLPQMG PAIEKLEALV 300 RFVNQADHLR QETLQQMSRI LNTHQAAQGL LALGEYFEQL RVLSSHWATR LHEPA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00642 | SELEX | Transfer from LOC107771743 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400011254 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | S73827 | 0.0 | S73827.1 Solanum tuberosum mas-binding factor MBF3 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001275332.1 | 0.0 | mas-binding factor MBF2 | ||||
Swissprot | P14232 | 0.0 | TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A | ||||
TrEMBL | M1A7B9 | 0.0 | M1A7B9_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g011670.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 1e-159 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400011254 |