PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011203
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 673aa    MW: 75198.7 Da    PI: 9.9652
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011203genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-091767448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                          W+t+E++ll+ avk++G ++W+++a +++        +t+  ck+++++++
  PGSC0003DMP400011203 17 WSTWEELLLAFAVKRHGLKDWESVAMELQnrislpALLTAQICKEKYRDLR 67
                          *****************************9999998899999****99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.481967IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-51166IPR009057Homeodomain-like
SuperFamilySSF466893.34E-61172IPR009057Homeodomain-like
SMARTSM007173.1E-41369IPR001005SANT/Myb domain
CDDcd001671.45E-51766No hitNo description
PfamPF002498.2E-81766IPR001005SANT/Myb domain
SMARTSM002976.4E-13124411IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.2E-15312413IPR001487Bromodomain
SuperFamilySSF473706.15E-17312410IPR001487Bromodomain
CDDcd043691.72E-11313384No hitNo description
PfamPF004392.5E-9317396IPR001487Bromodomain
PROSITE profilePS5001412.126321392IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MEKDSAAATT TTKKTIWSTW EELLLAFAVK RHGLKDWESV AMELQNRISL PALLTAQICK  60
EKYRDLRRRF MNSYNNSYDE KIIEQDVDGN GDVTIPWIEE LRQLRVAELQ QEVQRYDLSI  120
QSLELKVKKM EEEREQSLKE QSLDDGQKPD LEDVKEERSQ NDKNSGADVK PEDSTGKPVS  180
SEESDRENRS FNESNSTENR ETGVKNEPEP VEIGEDKPVQ EVKPVSEEDS YNDSSSDRQE  240
EKKARRDSGD LRDTVSGSKE ETKENSDVQS TATLTKRKRQ RGGDGGRSGG DAAEMGSPAV  300
GIKGDGAAKS EPLIEFLDII RSHKRGSVFK RRLDSQKTDK YKSMIRQHMD LETVQARIDD  360
GSYCSCPSKL YLDLLLIFNN AIVYFAKSSS ESSAANELRG IVMEELKKTR TQLKDVSPLK  420
IQPKPELERS DSLLAKHKST VPIVVCRKRS SISAKAAASS GNNKPEKPAD SKPPLNPKPP  480
AIKSSSNEEE SSIKLGVKEK PVTGVRSMRR SSKGRSTNNN NNNNASQSNS NQNTNAKQSN  540
SSGDKKEEAK PEKKKEESKK RGAAADFLKR IKKNSPTKGT LVEALKNNPP EDDVVVKGNK  600
RDQQKKKVDE RREAPVRRSG ASKDEGSPSK RSVGRPPKRG GGGREVVVQE KRGRENSEKD  660
DSTKRPKKRS RR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280KRKRQR
2663671KRPKKRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011203
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359167.10.0PREDICTED: ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800
TrEMBLM1A7730.0M1A773_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000161550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.15e-57DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]