PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011138
Common NameLOC102589373
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 776aa    MW: 86907.8 Da    PI: 6.385
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011138genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.72.5e-36149226178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +Cqv++Cead+se+k yh+rh+vC  +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++
  PGSC0003DMP400011138 149 RCQVPDCEADISELKGYHKRHRVCLRCANATAVVLDGHSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKAT 226
                           6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-27146211IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.402147224IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-33148228IPR004333Transcription factor, SBP-box
PfamPF031108.0E-27150224IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MHNQPSSPSQ TGAPTELRNT QMISSLLSGT PDDPAASSIF DWSDLLEFDL HEQLSISFDD  60
PLHQEQQPET ELVAPVIPSS EDSPQSQDTD AGRIRKRDPR MACSNFLAGQ IPCACPELDE  120
KMEEEEMAGI GPGKKRARTV RASAGAGARC QVPDCEADIS ELKGYHKRHR VCLRCANATA  180
VVLDGHSKRY CQQCGKFHIL SDFDEGKRSC RRKLERHNNR RRRKATDSSK TSAEKESQQV  240
TTADDVSGDD DIVKDSTCMG SQLGEKEILL ESEGHVPICS TQGIQNNHSD SFTASGETQV  300
DAEKENYKNS HSPTYYDNKS ALSSVCPTGR ISFKLYDWNP AEFPRRLRHQ IFQWLASMPV  360
ELEGYIRPGC TILTVFVAMP TFKWGKLLED PAAHLYELIA SPGNTLRGRG SFLIYLNNMV  420
FRVTKGENSV VKVKLKGPAP KLMSIHPTCF EAGKPMEFFA CGSNLMQPRF RFLVSFGGRY  480
LGNDNNVVPS DCKIEGDSRS MEHQLLKIHV PRTEADLFGP AFVEVENESG LSNFIPILVA  540
EKDICAEMKE IQRKFCSGGS ECTAVCSPCE ASTSRKSEFS EFMLDVAWLL REPSSENVQI  600
LASVQMQRFN YLLNILMESQ STIILERVLS YFENMVKRNM LAGITDADMR LFQKNILEKN  660
NLLKERLYLK EYFAGDSGQI IQEDTEVPHK HNIEFGPTYW ERTSTVPLLD AELPLRVKEE  720
QSGKSCGFLV RKTSRTLVFV ISGFALCLGL CATFLHPRKV SDIAMTIRRC LFDKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A4e-45145227183squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210222RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011138
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732960.0LC073296.1 Nicotiana tabacum NtabSPL7 mRNA for squamosa promoter binding protein NtabSPL7, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356994.10.0PREDICTED: squamosa promoter-binding-like protein 7 isoform X2
TrEMBLM1A7180.0M1A718_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000160720.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.20.0squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]