PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011014
Common NameLOC102597983
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 415aa    MW: 45325.8 Da    PI: 9.6511
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011014genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.82.3e-13336379548
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                           +r +r++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+++
  PGSC0003DMP400011014 336 RRHKRMIKNRESAARSRARKQAYTLELEAEVAKLKEINEELQEK 379
                           699************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.4E-11332393IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.231334379IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-10336383No hitNo description
Gene3DG3DSA:1.20.5.1706.8E-13336382No hitNo description
PfamPF001702.6E-11336381IPR004827Basic-leucine zipper domain
CDDcd147071.19E-23336390No hitNo description
PROSITE patternPS000360339354IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGSYLNFKNF TDTPQIESNG EKSLGSGSFP LARQSSMYSL TFEELQSTCG LGKDVGSMNL  60
EDLLRNIWTA EDSQALASSA GVGEGRMAAG NLQRQGSLTL PQTLNQRTVD EVWRDFQNET  120
TVSSNLGQKQ SNLGEMTLEE FLVRAGVVRD DNQPNGTSNN AGFAGVLGEP SSNNNALNIA  180
FQQPTQWPGL LSNQFAESNM LNVVSVKSSQ QQPHQQQPLI PKQRNVDFAS PMQLGNNCQL  240
ASPRVRALVV STSSRSVNTT VVQGGVMQNG VTGMAGLRSG VTFAPAKGGS PGNQLSSEMI  300
SNDKLNRPSP SPSPYAFNEG RRGRKSCSSL EKVVERRHKR MIKNRESAAR SRARKQAYTL  360
ELEAEVAKLK EINEELQEKQ AEFIDPQKNQ LLEKMNMPLG SKLRCLRRTL TGPW*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00038PBMTransfer from AT4G34000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356586.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBLM1A6S20.0M1A6S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000158920.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7762497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.16e-70abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]